diff --git a/about/index.html b/about/index.html index d9d1b1f..488cfe8 100644 --- a/about/index.html +++ b/about/index.html @@ -15,7 +15,7 @@ @@ -23,13 +23,13 @@ +We are committed to leveraging multidisciplinary integration to develop innovative methods, tools, and novel analytical approaches for tackling complex challenges in biomedicine."> +We are committed to leveraging multidisciplinary integration to develop innovative methods, tools, and novel analytical approaches for tackling complex challenges in biomedicine."> @@ -154,7 +154,7 @@

Welcome to the YuLab at Southern Medical University!

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We aim to advance human health, deepen our understanding of diseases, and improve treatments by developing innovative methods, tools, and novel analytical approaches.

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We are committed to leveraging multidisciplinary integration to develop innovative methods, tools, and novel analytical approaches for tackling complex challenges in biomedicine.

Professor and dean of the Department of Bioinformatics, School of Basic Medicine, Southern Medical University.

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My research group is committed to developing bioinformatics analysis algorithms and software through multidisciplinary integration, providing tools for exploring and analyzing data to solve complex issues in the field of biomedicine. At the same time, through the integration of multi-omics data, we systematically study the pathogenic mechanisms of reproduction and mental diseases.

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My research group is dedicated to developing innovative methods, tools, and novel analytical approaches through multidisciplinary integration to address complex problems in the field of biomedicine.

教授、博导，现任南方医科大学基础医学院生物信息学系系主任。

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课题组致力于通过多学科交叉融合，开发生物大数据分析算法和软件，为解决生物医学领域复杂问题提供探索和分析数据的工具；同时通过多组学数据融合，系统性地研究生育与精神类疾病的致病机理

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课题组致力于通过多学科交叉融合，开发创新方法、工具以及新颖的分析手段，以解决生物医学领域复杂问题。

Research Experience

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Certificate of Teaching and Learning in Higher Education

Scholarships & Awards

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南医优秀教师

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南医优秀教师

N/A

2024

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连续4年入选“终身科学影响力”排行榜

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Highly Cited Researcher

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Clarivate

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N/A

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2024 - 2023

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  • 连续两年入选
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“终身科学影响力”排行榜

全球前2%顶尖科学家榜单

N/A

2024 - 2021

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  • 连续4年入选
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连续5年入选“年度科学影响力”排行榜

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“年度科学影响力”排行榜

全球前2%顶尖科学家榜单

N/A

2024 - 2020

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  • 连续5年入选
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中国高被引学者

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Elsevier

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N/A

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2024 - 2021

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  • 连续4年入选
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Best Reviewer

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Best Paper

The Innovation

N/A

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Highly Cited Researcher

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Clarivate

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N/A

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2023

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连续3年入选“中国高被引学者”

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Elsevier

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N/A

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2023 - 2021

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2020学年教学优秀一等奖

南方医科大学

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Gene Ontology Semanti

Teaching Experience

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生物信息学

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School of Basic Medical Sciences

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Southern Medical University

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present - 2024

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  • PhD level class, invited lecture
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功能基因组学

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School of Basic Medical Sciences

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Southern Medical University

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  • Graduate level class
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生物技术前沿进展

School of Laboratory Medicine and Biotechnology

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生物技术前沿进展

  • Undergraduate level class
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    生物信息学

    School of Basic Medical Sciences

    Southern Medical University

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    功能蛋白质研究

    Publications

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    Scalable method for exploring phylogenetic placement uncertainty with custom visualizations using treeio and ggtree

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    iMeta. accepted.

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    N/A

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    2025

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    • M Chen#, X Luo#, S Xu#, L Li, J Li, Z Xie, Q Wang, Y Liao, B Liu, W Liang, K Mo, Q Song, X Chen*, TTY Lam*, G Yu*
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    Enhancing Immuno-Oncology Investigations Through Multidimensional Decoding of Tumour Microenvironment with IOBR 2.0

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    Cell Reports Methods. accepted.

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    N/A

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    • D Zeng#, Y Fang#, W Qiu; P Luo, S Wang; R Shen, W Gu, X Huang, Q Mao; G Wang, Y Lai; X Xu, M Shi, Z Wu*, G Yu*, W Liao*
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    Spatial Resolved Transcriptomics: Computational Insights into Gene Transcription Across Tissue and Organ Architecture in Diverse Applications

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    The Innovation Life. 2024, 2(4):100097.

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    N/A

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      +
    • Z Miao#, T Tian#, W Chen#, Q Wang#, L Ma#, D Zhang#, M Xie#, Z Yu#, X Guo, G Bai, S Zhao, X Chen, W Wang, Y Gao, S Guo*, M Luo*, L Yuan*, C Tian*, L Wu*, G Yu*, D Zhang*, S Sun*
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    Thirteen years of clusterProfiler

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    The Innovation. 2024, 5(6):100722.

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    N/A

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    • G Yu*
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    Using clusterProfiler to characterise Multi-Omics Data

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    Nature Protocols. 2024, accepted.

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    Nature Protocols. 2024, 19(11):3292-3320.

    N/A

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    2024

    • S Xu#, E Hu#, Y Cai#, Z Xie#, X Luo#, L Zhan, W Tang, Q Wang, B Liu, R Wang, W Xie, T Wu, L Xie, G Yu*

    tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

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    iMeta. 2024, X(X):e229.

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    iMeta. 2024, 3(5):e229.

    N/A

    • Y Chen#, LN He#, Y Zhang, J Gong, S Xu, Y Shu, D Zhang*, G Yu*, Z Zuo*
      • diff --git a/images/citation.png b/images/citation.png index bd37175..2259dc7 100644 Binary files a/images/citation.png and b/images/citation.png differ diff --git a/index.xml b/index.xml index 2725dbd..8656f58 100644 --- a/index.xml +++ b/index.xml @@ -118,7 +118,7 @@ http://yulab-smu.top/news/ Mon, 01 Jan 0001 00:00:00 +0000 http://yulab-smu.top/news/ - <p><strong><font color="green">Dec 2024</font></strong>: 刘方谱博士后加入课题组。</p> <p><strong><font color="green">Dec 2024</font></strong>: 余光创在南方医科大学2024年师德征文及微视频征集活动中获得师德征文二等奖。</p> <p><strong><font color="green">Dec 2024</font></strong>: <a href="https://doi.org/10.1016/j.crmeth.2024.100910" class="external-link" target="_blank" rel="noopener">IOBR 2.0</a>发表在<em><strong>Cell Reports Methods</strong></em>期刊。</p> <p><strong><font color="green">Nov 2024</font></strong>: 高校教师教学组织和教学发展体系建设研究项目“生物信息学知识图谱构建与应用研究”立项，余光创为主要成员之一。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创引用超过5万次（数据来自谷歌学术）。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创受邀为布朗大学（Brown University，八所常春藤盟校之一）数学计算与实验研究所（ICERM）的学期项目研讨会（Semester Program Workshop）“<a href="https://icerm.brown.edu/program/semester_program_workshop/sp-f24-w3" class="external-link" target="_blank" rel="noopener">Algorithmic Advances and Implementation Challenges: Developing Practical Tools for Phylogenetic Inference</a>” 授课。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创入选2024年度全球高被引学者。 <img src="http://yulab-smu.top/images/award/HCR-Ribbon_Email_166h_ForResearchers-2024.png" style="height:150px;" align="right"/></p> <ul> <li><a href="https://www.chinagut.cn/articles/ss/b484ab06fe1c440f9df6da94502aeb5e?u=744989" class="external-link" target="_blank" rel="noopener">祝贺17位热心肠智库专家入选2024年度“全球高被引科学家”名单</a></li> <li><a href="https://mp.weixin.qq.com/s/bPLh_hyesmMiHGsL9kJOXQ" class="external-link" target="_blank" rel="noopener">iMeta期刊40位编委入选2024年全球高被引学者</a></li> </ul> <p><strong><font color="green">Nov 2024</font></strong>: 国家级大学生创新训练项目“挖掘生物医学知识进行代谢产物与疾病的关联研究”获得立项。</p> <p><strong><font color="green">Nov 2024</font></strong>: 刘纯海加入课题组。</p> <p><strong><font color="green">Nov 2024</font></strong>: 恭喜唐文丽获得硕士研究生国家奖学金补充计划。</p> <p><strong><font color="green">Nov 2024</font></strong>: 王倩雯、王芮、廖俞凡获得第二届Bio-OS开源开放大赛任务挑战赛三等奖。</p> <p><strong><font color="green">Nov 2024</font></strong>: 恭喜邓琳获得硕士研究生国家奖学金。</p> <p><strong><font color="green">Oct 2024</font></strong>: 文章<a href="https://doi.org/10.1016/j.xinn.2024.100722" class="external-link" target="_blank" rel="noopener">Thirteen years of clusterProfiler</a>，在<em><strong>The Innovation</strong></em>在线发表。</p> <ul> <li>The Innovation官方公众号报道：<a href="https://mp.weixin.qq.com/s/AX-2UJD_kq4O3v8fwPNVTg" class="external-link" target="_blank" rel="noopener">The Innovation | clusterProfiler开发历程</a></li> </ul> <p><strong><font color="green">Oct 2024</font></strong>: 恭喜徐双斌（课题组第一个博士生）通过骨干教师引进生物信息学系工作。</p> <p><strong><font color="green">Oct 2024</font></strong>: 综述文章：<a href="https://www.the-innovation.org/article/doi/10.59717/j.xinn-life.2024.100097" class="external-link" target="_blank" rel="noopener">Spatial Resolved Transcriptomics: Computational Insights into Gene Transcription Across Tissue and Organ Architecture in Diverse Applications</a>，在<em><strong>The Innovation Life</strong></em>发表。</p> + <p><strong><font color="green">Dec 2024</font></strong>: 刘方谱（博士后）加入课题组。</p> <p><strong><font color="green">Dec 2024</font></strong>: 余光创在南方医科大学2024年师德征文及微视频征集活动中获得师德征文二等奖。</p> <p><strong><font color="green">Dec 2024</font></strong>: <a href="https://doi.org/10.1016/j.crmeth.2024.100910" class="external-link" target="_blank" rel="noopener">IOBR 2.0</a>发表在<em><strong>Cell Reports Methods</strong></em>期刊。</p> <p><strong><font color="green">Nov 2024</font></strong>: 高校教师教学组织和教学发展体系建设研究项目“生物信息学知识图谱构建与应用研究”立项，余光创为主要成员之一。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创引用超过5万次（数据来自谷歌学术）。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创受邀为布朗大学（Brown University，八所常春藤盟校之一）数学计算与实验研究所（ICERM）的学期项目研讨会（Semester Program Workshop）“<a href="https://icerm.brown.edu/program/semester_program_workshop/sp-f24-w3" class="external-link" target="_blank" rel="noopener">Algorithmic Advances and Implementation Challenges: Developing Practical Tools for Phylogenetic Inference</a>” 授课。</p> <p><strong><font color="green">Nov 2024</font></strong>: 余光创入选2024年度全球高被引学者。 <img src="http://yulab-smu.top/images/award/HCR-Ribbon_Email_166h_ForResearchers-2024.png" style="height:150px;" align="right"/></p> <ul> <li><a href="https://www.chinagut.cn/articles/ss/b484ab06fe1c440f9df6da94502aeb5e?u=744989" class="external-link" target="_blank" rel="noopener">祝贺17位热心肠智库专家入选2024年度“全球高被引科学家”名单</a></li> <li><a href="https://mp.weixin.qq.com/s/bPLh_hyesmMiHGsL9kJOXQ" class="external-link" target="_blank" rel="noopener">iMeta期刊40位编委入选2024年全球高被引学者</a></li> </ul> <p><strong><font color="green">Nov 2024</font></strong>: 国家级大学生创新训练项目“挖掘生物医学知识进行代谢产物与疾病的关联研究”获得立项。</p> <p><strong><font color="green">Nov 2024</font></strong>: 刘纯海加入课题组。</p> <p><strong><font color="green">Nov 2024</font></strong>: 恭喜唐文丽获得硕士研究生国家奖学金补充计划。</p> <p><strong><font color="green">Nov 2024</font></strong>: 王倩雯、王芮、廖俞凡获得第二届Bio-OS开源开放大赛任务挑战赛三等奖。</p> <p><strong><font color="green">Nov 2024</font></strong>: 恭喜邓琳获得硕士研究生国家奖学金。</p> <p><strong><font color="green">Oct 2024</font></strong>: 文章<a href="https://doi.org/10.1016/j.xinn.2024.100722" class="external-link" target="_blank" rel="noopener">Thirteen years of clusterProfiler</a>，在<em><strong>The Innovation</strong></em>在线发表。</p> <ul> <li>The Innovation官方公众号报道：<a href="https://mp.weixin.qq.com/s/AX-2UJD_kq4O3v8fwPNVTg" class="external-link" target="_blank" rel="noopener">The Innovation | clusterProfiler开发历程</a></li> </ul> <p><strong><font color="green">Oct 2024</font></strong>: 恭喜徐双斌（课题组第一个博士生）通过骨干教师引进生物信息学系工作。</p> <p><strong><font color="green">Oct 2024</font></strong>: 综述文章：<a href="https://www.the-innovation.org/article/doi/10.59717/j.xinn-life.2024.100097" class="external-link" target="_blank" rel="noopener">Spatial Resolved Transcriptomics: Computational Insights into Gene Transcription Across Tissue and Organ Architecture in Diverse Applications</a>，在<em><strong>The Innovation Life</strong></em>发表。</p> Projects @@ -153,7 +153,7 @@ http://yulab-smu.top/about/ Mon, 01 Jan 0001 00:00:00 +0000 http://yulab-smu.top/about/ - <center><img src="http://yulab-smu.top/images/members/20240910.png" width='1000px'></center> <p>Welcome to the YuLab at Southern Medical University!</p> <p>We aim to advance human health, deepen our understanding of diseases, and improve treatments by developing innovative methods, tools, and novel analytical approaches.</p> <!-- ## Research Interest ### Microecological Analysis and Intervention Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677). ### Bioinformaitcs tool development The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data. --> + <center><img src="http://yulab-smu.top/images/members/20240910.png" width='1000px'></center> <p>Welcome to the YuLab at Southern Medical University!</p> <p>We are committed to leveraging multidisciplinary integration to develop innovative methods, tools, and novel analytical approaches for tackling complex challenges in biomedicine.</p> <!-- ## Research Interest ### Microecological Analysis and Intervention Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677). ### Bioinformaitcs tool development The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data. --> 课题组学术榜 diff --git a/news/index.html b/news/index.html index 71c7969..8f584b4 100644 --- a/news/index.html +++ b/news/index.html @@ -13,7 +13,7 @@ - - -

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    Dec 2024: 刘方谱博士后加入课题组。

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    Dec 2024: 刘方谱（博士后）加入课题组。

    Dec 2024: 余光创在南方医科大学2024年师德征文及微视频征集活动中获得师德征文二等奖。

    Dec 2024: IOBR 2.0发表在Cell Reports Methods期刊。

    Nov 2024: 高校教师教学组织和教学发展体系建设研究项目“生物信息学知识图谱构建与应用研究”立项，余光创为主要成员之一。