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how to draw a heatmap from phyloseq class files #192

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sicencecat opened this issue Aug 25, 2018 · 1 comment
Open

how to draw a heatmap from phyloseq class files #192

sicencecat opened this issue Aug 25, 2018 · 1 comment

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@sicencecat
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Hi, Everyone!
I want to draw a heatmap from a phyloseq class file. Phyloseq class files contained out tables, sample information, and taxa classification.
Could I draw a heatmap from this kind of file?
p<-ggtree(ver, layout = "circular")
sm<- psmelt(ver)
heatmapData<-sm$location
gheatmap(p,heatmapData, offset = 0.1, color=NULL)
Error in data.frame(from = dd$variable, to = V2) :
arguments imply differing number of rows: 343, 0
@GuangchuangYu
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reproducible example needed.

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@GuangchuangYu @sicencecat