diff --git a/_data/publications.yml b/_data/publications.yml index 70bd9ed..9002f8b 100644 --- a/_data/publications.yml +++ b/_data/publications.yml @@ -165,23 +165,55 @@ #2024 +- authors: "A. Gayoso\\*, P. Weiler\\*, M. Lotfollahi, D. Klein, J. Hong, A. Streets, FJ. Theis†, N. Yosef†" + title: "Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells" + details: Nature Methods + year: 2024 + pmid: + pmcid: + openaccess: + doi: 10.1101/2022.08.12.503709 + file: + filetype: + biorxiv: https://www.biorxiv.org/content/10.1101/2022.08.12.503709v1 + arxiv: + contentshare: + preprint: false + scvitools: true + - authors: "CR. Simoneau\\*, P. Chen\\*, GK. Xing\\*, MM. Khalid, NL. Meyers, JM. Hayashi, TY. Taha, KE. Leon, T. Ashuach, KA. Fontaine, L. Rodriguez, B. Joehnk, K. Walcott, S. Vasudevan, X. Fang, M. Maishan, S. Schultz, J. Roose, MA. Matthay, A. Sil, M. Arjomandi, N. Yosef†, M. Ott†" title: "NF-κB inhibitor alpha has a cross-variant role during SARS-CoV-2 infection in ACE2-overexpressing human airway organoids" - details: bioRxiv - year: 2023 + details: Scientific Reports + year: 2024 pmid: pmcid: openaccess: - doi: 10.1101/2022.08.02.502100 + doi: 10.1038/s41598-024-66003-2 file: filetype: - biorxiv: https://www.biorxiv.org/content/10.1101/2022.08.02.502100v1.full + biorxiv: arxiv: contentshare: - preprint: true + preprint: false scvitools: false +- authors: "The Critical Assessment of Genome Interpretation Consortium" + title: "CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods" + details: Genome Biology + year: 2024 + pmid: + pmcid: + openaccess: + doi: 10.1186/s13059-023-03113-6 + file: + filetype: + biorxiv: + arxiv: + contentshare: + preprint: false + scvitools: false + # 2023 @@ -201,21 +233,6 @@ contentshare: preprint: false -- authors: "A. Gayoso\\*, P. Weiler\\*, M. Lotfollahi, D. Klein, J. Hong, A. Streets, FJ. Theis†, N. Yosef†" - title: "Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells" - details: Nature Methods (to appear) - year: 2023 - pmid: - pmcid: - openaccess: - doi: 10.1101/2022.08.12.503709 - file: - filetype: - biorxiv: https://www.biorxiv.org/content/10.1101/2022.08.12.503709v1 - arxiv: - contentshare: - preprint: false - scvitools: true - authors: "P. Boyeau, J. Regier, A. Gayoso, M.I. Jordan, R. Lopez†, N. Yosef†" title: "An Empirical Bayes Method for Differential Expression Analysis of Single Cells with Deep Generative Models"