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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>XbiomeAnalysis</title>
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="in-house data analysis pipeline">
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<meta property="og:title" content="XbiomeAnalysis">
<meta property="og:url" content="https://xbiomeanalysis.github.io/index.html">
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<meta property="og:description" content="in-house data analysis pipeline">
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<meta property="article:author" content="Hua Zou">
<meta property="article:tag" content="microbiome">
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<h1 id="logo-wrap">
<a href="/" id="logo">XbiomeAnalysis</a>
</h1>
<h2 id="subtitle-wrap">
<a href="/" id="subtitle">Data analysis SOP in Xbiome</a>
</h2>
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<a href="/2023/12/20/homepage/" class="article-date">
<time class="dt-published" datetime="2023-12-20T09:49:46.719Z" itemprop="datePublished">2023-12-20</time>
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<header class="article-header">
<h1 itemprop="name">
<a class="p-name article-title" href="/2023/12/20/homepage/">Homepage of analysis SOPs</a>
</h1>
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<div class="e-content article-entry" itemprop="articleBody">
<p>Welcome to the <strong>Homepage</strong> for in-house data analysis SOPs. It contains several pipelines like the following.</p>
<ul>
<li><p>XMAS tutorial</p>
</li>
<li><p>16s Data analysis SOP</p>
</li>
<li><p>MGS Data analysis SOP</p>
</li>
<li><p>Functional analysis SOP</p>
</li>
<li><p>Metabolomics analysis SOP</p>
</li>
<li><p>Omics analysis SOP</p>
</li>
<li><p>RNA-seq pipeline SOP</p>
</li>
</ul>
<h2 id="XMAS-tutorial"><a href="#XMAS-tutorial" class="headerlink" title="XMAS tutorial"></a>XMAS tutorial</h2><p><strong><a href="https://xbiomeanalysis.github.io/XMAS_tutorial/">XMAS tutorial</a></strong> provides a comprehensive help documents on how to use the <strong>XMAS R pacakge</strong> for beginners.</p>
<h2 id="16s-Data-analysis-SOP"><a href="#16s-Data-analysis-SOP" class="headerlink" title="16s Data analysis SOP"></a>16s Data analysis SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/16s_DataAnalysis_template/">16s Data analysis SOP</a></strong> providing a demo, helps users to do the standard data analysis on <strong>amplicon sequencing data (16s)</strong> using functions from <strong>XMAS R pacakge</strong>.</p>
<h2 id="MGS-Data-analysis-SOP"><a href="#MGS-Data-analysis-SOP" class="headerlink" title="MGS Data analysis SOP"></a>MGS Data analysis SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/MGS_DataAnalysis_template/">MGS Data analysis SOP</a></strong> providing a demo, helps users to do the standard data analysis on <strong>metagenomic sequencing data (MGS)</strong> using functions from <strong>XMAS R pacakge</strong>.</p>
<h2 id="Functional-analysis-SOP"><a href="#Functional-analysis-SOP" class="headerlink" title="Functional analysis SOP"></a>Functional analysis SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/Functional_analysis/">Functional analysis SOP</a></strong> providing a demo, helps users to do <strong>functional analysis</strong>.</p>
<h2 id="Metabolomics-analysis-SOP"><a href="#Metabolomics-analysis-SOP" class="headerlink" title="Metabolomics analysis SOP"></a>Metabolomics analysis SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/Metabolomics_Aanlysis/">Metabolomics analysis SOP</a></strong> providing a demo, helps users to do <strong>Metabolomic data analysis</strong>.</p>
<h2 id="Omics-analysis-SOP"><a href="#Omics-analysis-SOP" class="headerlink" title="Omics analysis SOP"></a>Omics analysis SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/Omics_analysis/">Omics analysis SOP</a></strong> providing a demo, helps users to do <strong>Omics-data analysis</strong>.</p>
<h2 id="RNA-seq-pipeline-SOP"><a href="#RNA-seq-pipeline-SOP" class="headerlink" title="RNA-seq pipeline SOP"></a>RNA-seq pipeline SOP</h2><p><strong><a href="https://xbiomeanalysis.github.io/RNAseq_pipeline/">RNA-seq pipeline SOP</a></strong> providing a demo, helps users to do <strong>RNA-seq data analysis</strong>.</p>
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<h3 class="widget-title">Archives</h3>
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<ul class="archive-list"><li class="archive-list-item"><a class="archive-list-link" href="/archives/2023/12/">December 2023</a></li></ul>
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