From 25354ab2f6fb57385b7ea8171f8a8fce85d800b5 Mon Sep 17 00:00:00 2001
From: Kevin Howe <klh@ebi.ac.uk>
Date: Fri, 14 Jun 2019 10:25:42 +0100
Subject: [PATCH] Needed to dereference the Sequence_collection object to get
 the name

---
 scripts/make_assembly_manifest.pl | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/scripts/make_assembly_manifest.pl b/scripts/make_assembly_manifest.pl
index 147495cdb..aa9b8d392 100644
--- a/scripts/make_assembly_manifest.pl
+++ b/scripts/make_assembly_manifest.pl
@@ -114,15 +114,15 @@
     if ($obj->{full_name} =~ /Caenorhabditis/) {
       # for Caen, default to the strain name; only use assembly name if strain not defined
       if (defined $strain) {
-        $short_label = $strain;
+        $short_label = $strain->name;
       } elsif (defined $assembly_name) {
-        $short_label = $assembly_name;
+        $short_label = $assembly_name->name;
       }
     } else {
       if (defined $assembly_name) {
-        $short_label = $assembly_name;
+        $short_label = $assembly_name->name;
       } elsif (defined $strain) {
-        $short_label = $strain;
+        $short_label = $strain->name;
       }
     }
     $short_label = $bioproj if not defined $short_label;