From 4f80fc0df86ed6365deba74aa24398520c1f54b6 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Wed, 17 Jul 2024 13:36:57 -0700 Subject: [PATCH] species specific gene config to parallel jb1 config --- jbrowse2/config/track_configs/b_malayi_PRJNA10729_genes.json | 1 + jbrowse2/config/track_configs/c_angaria_PRJNA51225_genes.json | 1 + jbrowse2/config/track_configs/c_becei_PRJEB28243_genes.json | 1 + jbrowse2/config/track_configs/c_bovis_PRJEB34497_genes.json | 1 + jbrowse2/config/track_configs/c_brenneri_PRJNA20035_genes.json | 1 + jbrowse2/config/track_configs/c_briggsae_PRJNA10731_genes.json | 1 + jbrowse2/config/track_configs/c_elegans_PRJEB28388_genes.json | 1 + .../{genes.json => c_elegans_PRJNA13758_genes.json} | 0 jbrowse2/config/track_configs/c_elegans_PRJNA275000_genes.json | 1 + jbrowse2/config/track_configs/c_inopinata_PRJDB5687_genes.json | 1 + jbrowse2/config/track_configs/c_japonica_PRJNA12591_genes.json | 1 + jbrowse2/config/track_configs/c_latens_PRJNA248912_genes.json | 1 + jbrowse2/config/track_configs/c_nigoni_PRJNA384657_genes.json | 1 + jbrowse2/config/track_configs/c_panamensis_PRJEB28259_genes.json | 1 + jbrowse2/config/track_configs/c_parvicauda_PRJEB12595_genes.json | 1 + .../config/track_configs/c_quiockensis_PRJEB11354_genes.json | 1 + jbrowse2/config/track_configs/c_remanei_PRJNA53967_genes.json | 1 + jbrowse2/config/track_configs/c_remanei_PRJNA577507_genes.json | 1 + jbrowse2/config/track_configs/c_sinica_PRJNA194557_genes.json | 1 + jbrowse2/config/track_configs/c_sulstoni_PRJEB12601_genes.json | 1 + .../config/track_configs/c_tribulationis_PRJEB12608_genes.json | 1 + jbrowse2/config/track_configs/c_tropicalis_PRJNA53597_genes.json | 1 + jbrowse2/config/track_configs/c_uteleia_PRJEB12600_genes.json | 1 + .../config/track_configs/c_waitukubuli_PRJEB12602_genes.json | 1 + jbrowse2/config/track_configs/c_zanzibari_PRJEB12596_genes.json | 1 + jbrowse2/config/track_configs/o_tipulae_PRJEB15512_genes.json | 1 + jbrowse2/config/track_configs/o_volvulus_PRJEB513_genes.json | 1 + jbrowse2/config/track_configs/p_pacificus_PRJNA12644_genes.json | 1 + jbrowse2/config/track_configs/p_redivivus_PRJNA186477_genes.json | 1 + jbrowse2/config/track_configs/s_ratti_PRJEB125_genes.json | 1 + jbrowse2/config/track_configs/t_muris_PRJEB126_genes.json | 1 + 31 files changed, 30 insertions(+) create mode 120000 jbrowse2/config/track_configs/b_malayi_PRJNA10729_genes.json create mode 120000 jbrowse2/config/track_configs/c_angaria_PRJNA51225_genes.json create mode 120000 jbrowse2/config/track_configs/c_becei_PRJEB28243_genes.json create mode 120000 jbrowse2/config/track_configs/c_bovis_PRJEB34497_genes.json create mode 120000 jbrowse2/config/track_configs/c_brenneri_PRJNA20035_genes.json create mode 120000 jbrowse2/config/track_configs/c_briggsae_PRJNA10731_genes.json create mode 120000 jbrowse2/config/track_configs/c_elegans_PRJEB28388_genes.json rename jbrowse2/config/track_configs/{genes.json => c_elegans_PRJNA13758_genes.json} (100%) create mode 120000 jbrowse2/config/track_configs/c_elegans_PRJNA275000_genes.json create mode 120000 jbrowse2/config/track_configs/c_inopinata_PRJDB5687_genes.json create mode 120000 jbrowse2/config/track_configs/c_japonica_PRJNA12591_genes.json create mode 120000 jbrowse2/config/track_configs/c_latens_PRJNA248912_genes.json create mode 120000 jbrowse2/config/track_configs/c_nigoni_PRJNA384657_genes.json create mode 120000 jbrowse2/config/track_configs/c_panamensis_PRJEB28259_genes.json create mode 120000 jbrowse2/config/track_configs/c_parvicauda_PRJEB12595_genes.json create mode 120000 jbrowse2/config/track_configs/c_quiockensis_PRJEB11354_genes.json create mode 120000 jbrowse2/config/track_configs/c_remanei_PRJNA53967_genes.json create mode 120000 jbrowse2/config/track_configs/c_remanei_PRJNA577507_genes.json create mode 120000 jbrowse2/config/track_configs/c_sinica_PRJNA194557_genes.json create mode 120000 jbrowse2/config/track_configs/c_sulstoni_PRJEB12601_genes.json create mode 120000 jbrowse2/config/track_configs/c_tribulationis_PRJEB12608_genes.json create mode 120000 jbrowse2/config/track_configs/c_tropicalis_PRJNA53597_genes.json create mode 120000 jbrowse2/config/track_configs/c_uteleia_PRJEB12600_genes.json create mode 120000 jbrowse2/config/track_configs/c_waitukubuli_PRJEB12602_genes.json create mode 120000 jbrowse2/config/track_configs/c_zanzibari_PRJEB12596_genes.json create mode 120000 jbrowse2/config/track_configs/o_tipulae_PRJEB15512_genes.json create mode 120000 jbrowse2/config/track_configs/o_volvulus_PRJEB513_genes.json create mode 120000 jbrowse2/config/track_configs/p_pacificus_PRJNA12644_genes.json create mode 120000 jbrowse2/config/track_configs/p_redivivus_PRJNA186477_genes.json create mode 120000 jbrowse2/config/track_configs/s_ratti_PRJEB125_genes.json create mode 120000 jbrowse2/config/track_configs/t_muris_PRJEB126_genes.json diff --git a/jbrowse2/config/track_configs/b_malayi_PRJNA10729_genes.json b/jbrowse2/config/track_configs/b_malayi_PRJNA10729_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/b_malayi_PRJNA10729_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_angaria_PRJNA51225_genes.json b/jbrowse2/config/track_configs/c_angaria_PRJNA51225_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_angaria_PRJNA51225_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_becei_PRJEB28243_genes.json b/jbrowse2/config/track_configs/c_becei_PRJEB28243_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_becei_PRJEB28243_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_bovis_PRJEB34497_genes.json b/jbrowse2/config/track_configs/c_bovis_PRJEB34497_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_bovis_PRJEB34497_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_brenneri_PRJNA20035_genes.json b/jbrowse2/config/track_configs/c_brenneri_PRJNA20035_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_brenneri_PRJNA20035_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_briggsae_PRJNA10731_genes.json b/jbrowse2/config/track_configs/c_briggsae_PRJNA10731_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_briggsae_PRJNA10731_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_elegans_PRJEB28388_genes.json b/jbrowse2/config/track_configs/c_elegans_PRJEB28388_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_elegans_PRJEB28388_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/genes.json b/jbrowse2/config/track_configs/c_elegans_PRJNA13758_genes.json similarity index 100% rename from jbrowse2/config/track_configs/genes.json rename to jbrowse2/config/track_configs/c_elegans_PRJNA13758_genes.json diff --git a/jbrowse2/config/track_configs/c_elegans_PRJNA275000_genes.json b/jbrowse2/config/track_configs/c_elegans_PRJNA275000_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_elegans_PRJNA275000_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_inopinata_PRJDB5687_genes.json b/jbrowse2/config/track_configs/c_inopinata_PRJDB5687_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_inopinata_PRJDB5687_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_japonica_PRJNA12591_genes.json b/jbrowse2/config/track_configs/c_japonica_PRJNA12591_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_japonica_PRJNA12591_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_latens_PRJNA248912_genes.json b/jbrowse2/config/track_configs/c_latens_PRJNA248912_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_latens_PRJNA248912_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_nigoni_PRJNA384657_genes.json b/jbrowse2/config/track_configs/c_nigoni_PRJNA384657_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_nigoni_PRJNA384657_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_panamensis_PRJEB28259_genes.json b/jbrowse2/config/track_configs/c_panamensis_PRJEB28259_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_panamensis_PRJEB28259_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_parvicauda_PRJEB12595_genes.json b/jbrowse2/config/track_configs/c_parvicauda_PRJEB12595_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_parvicauda_PRJEB12595_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_quiockensis_PRJEB11354_genes.json b/jbrowse2/config/track_configs/c_quiockensis_PRJEB11354_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_quiockensis_PRJEB11354_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_remanei_PRJNA53967_genes.json b/jbrowse2/config/track_configs/c_remanei_PRJNA53967_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_remanei_PRJNA53967_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_remanei_PRJNA577507_genes.json b/jbrowse2/config/track_configs/c_remanei_PRJNA577507_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_remanei_PRJNA577507_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_sinica_PRJNA194557_genes.json b/jbrowse2/config/track_configs/c_sinica_PRJNA194557_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_sinica_PRJNA194557_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_sulstoni_PRJEB12601_genes.json b/jbrowse2/config/track_configs/c_sulstoni_PRJEB12601_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_sulstoni_PRJEB12601_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_tribulationis_PRJEB12608_genes.json b/jbrowse2/config/track_configs/c_tribulationis_PRJEB12608_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_tribulationis_PRJEB12608_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_tropicalis_PRJNA53597_genes.json b/jbrowse2/config/track_configs/c_tropicalis_PRJNA53597_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_tropicalis_PRJNA53597_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_uteleia_PRJEB12600_genes.json b/jbrowse2/config/track_configs/c_uteleia_PRJEB12600_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_uteleia_PRJEB12600_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_waitukubuli_PRJEB12602_genes.json b/jbrowse2/config/track_configs/c_waitukubuli_PRJEB12602_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_waitukubuli_PRJEB12602_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/c_zanzibari_PRJEB12596_genes.json b/jbrowse2/config/track_configs/c_zanzibari_PRJEB12596_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/c_zanzibari_PRJEB12596_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/o_tipulae_PRJEB15512_genes.json b/jbrowse2/config/track_configs/o_tipulae_PRJEB15512_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/o_tipulae_PRJEB15512_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/o_volvulus_PRJEB513_genes.json b/jbrowse2/config/track_configs/o_volvulus_PRJEB513_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/o_volvulus_PRJEB513_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/p_pacificus_PRJNA12644_genes.json b/jbrowse2/config/track_configs/p_pacificus_PRJNA12644_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/p_pacificus_PRJNA12644_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/p_redivivus_PRJNA186477_genes.json b/jbrowse2/config/track_configs/p_redivivus_PRJNA186477_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/p_redivivus_PRJNA186477_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/s_ratti_PRJEB125_genes.json b/jbrowse2/config/track_configs/s_ratti_PRJEB125_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/s_ratti_PRJEB125_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file diff --git a/jbrowse2/config/track_configs/t_muris_PRJEB126_genes.json b/jbrowse2/config/track_configs/t_muris_PRJEB126_genes.json new file mode 120000 index 00000000..bf846f6d --- /dev/null +++ b/jbrowse2/config/track_configs/t_muris_PRJEB126_genes.json @@ -0,0 +1 @@ +c_elegans_PRJNA13758_genes.json \ No newline at end of file