diff --git a/deps.edn b/deps.edn index b39a59b2..dbc060bc 100644 --- a/deps.edn +++ b/deps.edn @@ -6,32 +6,29 @@ "clojars" {:url "https://repo.clojars.org/"}} :deps {org.clojure/clojure {:mvn/version "1.10.1"} - org.clojure/data.csv {:mvn/version "1.0.0"} + org.clojure/data.csv {:mvn/version "1.0.1"} org.clojure/tools.cli {:mvn/version "1.0.194"} - org.clojure/tools.logging {:mvn/version "1.1.0"} - clojure.java-time/clojure.java-time {:mvn/version "0.3.2"} + org.clojure/tools.logging {:mvn/version "1.2.4"} + clojure.java-time/clojure.java-time {:mvn/version "1.4.2"} aero/aero {:mvn/version "1.1.6"} bk/ring-gzip {:mvn/version "0.3.0"} - buddy/buddy-auth {:mvn/version "2.2.0"} + buddy/buddy-auth {:mvn/version "3.0.323"} buddy/buddy-hashers {:mvn/version "2.0.167"} - com.taoensso/nippy {:mvn/version "2.14.0"} - cheshire/cheshire {:mvn/version "5.10.0"} danlentz/clj-uuid {:mvn/version "0.1.9"} environ/environ {:mvn/version "1.2.0"} - expound/expound {:mvn/version "0.8.5"} - com.google.api-client/google-api-client {:mvn/version "1.35.2"} + expound/expound {:mvn/version "0.9.0"} + com.google.api-client/google-api-client {:mvn/version "2.2.0"} metosin/compojure-api {:mvn/version "2.0.0-alpha30" :exclusions [frankiesardo/linked]} - metosin/muuntaja {:mvn/version "0.6.7"} + metosin/muuntaja {:mvn/version "0.6.8"} ikitommi/linked {:mvn/version "1.3.1-alpha1"} - mount/mount {:mvn/version "0.1.16"} + mount/mount {:mvn/version "0.1.17"} phrase/phrase {:mvn/version "0.3-alpha4"} - ring/ring-codec {:mvn/version "1.1.2"} - ring/ring-defaults {:mvn/version "0.3.2"} - ring/ring-jetty-adapter {:mvn/version "1.8.1"} + ring/ring-codec {:mvn/version "1.2.0"} + ring/ring-defaults {:mvn/version "0.4.0"} + ring/ring-jetty-adapter {:mvn/version "1.10.0"} semantic-csv/semantic-csv {:mvn/version "0.2.1-alpha1"} user-agent/user-agent {:mvn/version "0.1.1"} - com.taoensso/encore {:mvn/version "2.120.0"} magnetcoop/stork {:mvn/version "0.1.6"}} :aliases {:1.9 {:override-deps {org.clojure/clojure {:mvn/version "1.9.0"}}} diff --git a/src/wormbase/names/batch/generic.clj b/src/wormbase/names/batch/generic.clj index f69da5ea..1a53118c 100644 --- a/src/wormbase/names/batch/generic.clj +++ b/src/wormbase/names/batch/generic.clj @@ -4,7 +4,7 @@ [compojure.api.sweet :as sweet] [clj-uuid :as uuid] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [ring.util.http-response :refer [bad-request created not-found! not-modified ok]] [spec-tools.spec :as sts] [wormbase.db :as wdb] diff --git a/src/wormbase/names/importers/processing.clj b/src/wormbase/names/importers/processing.clj index f5fe65d7..aa841bc5 100644 --- a/src/wormbase/names/importers/processing.clj +++ b/src/wormbase/names/importers/processing.clj @@ -7,7 +7,7 @@ [clojure.string :as str] [datomic.api :as d] [environ.core :as environ] - [java-time :as jt] + [java-time.api :as jt] [semantic-csv.core :as sc] [wormbase.names.auth :as wna] [wormbase.specs.entity :as wse] diff --git a/src/wormbase/names/provenance.clj b/src/wormbase/names/provenance.clj index 0e75c499..d9623930 100644 --- a/src/wormbase/names/provenance.clj +++ b/src/wormbase/names/provenance.clj @@ -3,7 +3,7 @@ [clojure.spec.alpha :as s] [clojure.string :as str] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [wormbase.db :as wdb] [wormbase.names.agent :as wna] [wormbase.names.util :as wnu] diff --git a/src/wormbase/names/recent.clj b/src/wormbase/names/recent.clj index 729fe3ea..472d4103 100644 --- a/src/wormbase/names/recent.clj +++ b/src/wormbase/names/recent.clj @@ -2,7 +2,7 @@ (:require [compojure.api.sweet :as sweet] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [ring.util.http-response :refer [ok]] [wormbase.names.provenance :as wnp] [wormbase.names.util :as wnu] diff --git a/src/wormbase/specs/provenance.clj b/src/wormbase/specs/provenance.clj index 47b3106f..c6bdb38b 100644 --- a/src/wormbase/specs/provenance.clj +++ b/src/wormbase/specs/provenance.clj @@ -2,7 +2,7 @@ (:require [clojure.spec.alpha :as s] [clojure.string :as str] - [java-time :as jt] + [java-time.api :as jt] [spec-tools.core :as stc] [spec-tools.spec :as sts] [wormbase.specs.person] ;; side effecting: to bring in specs diff --git a/src/wormbase/specs/recent.clj b/src/wormbase/specs/recent.clj index 79f655ce..bbb3ca27 100644 --- a/src/wormbase/specs/recent.clj +++ b/src/wormbase/specs/recent.clj @@ -2,7 +2,7 @@ (:require [clojure.spec.alpha :as s] [clojure.string :as str] - [java-time :as jt] + [java-time.api :as jt] [spec-tools.spec :as sts] [spec-tools.core :as stc] [wormbase.util :as wu] diff --git a/src/wormbase/util.clj b/src/wormbase/util.clj index fe6d38ca..0278b8c2 100644 --- a/src/wormbase/util.clj +++ b/src/wormbase/util.clj @@ -5,7 +5,7 @@ [clojure.string :as str] [clojure.walk :as w] [aero.core :as aero] - [java-time :as jt] + [java-time.api :as jt] [wormbase.ids.core :as wic]) (:import (java.io File PushbackReader) diff --git a/test-system/deps.edn b/test-system/deps.edn index 58c2d814..4af79c44 100644 --- a/test-system/deps.edn +++ b/test-system/deps.edn @@ -2,7 +2,7 @@ :deps {org.clojure/clojure {:mvn/version "1.10.1"} org.clojure/tools.cli {:mvn/version "1.0.194"} amazonica/amazonica {:mvn/version "0.3.152"} - clojure.java-time/clojure.java-time {:mvn/version "0.3.2"}} + clojure.java-time/clojure.java-time {:mvn/version "1.4.2"}} :aliases {:test {:extra-paths ["test"] :extra-deps {org.clojure/test.check {:mvn/version "1.0.0"}}} diff --git a/test-system/src/wormbase/names/test_system.clj b/test-system/src/wormbase/names/test_system.clj index 0f48fbcb..6d8eb585 100644 --- a/test-system/src/wormbase/names/test_system.clj +++ b/test-system/src/wormbase/names/test_system.clj @@ -6,7 +6,7 @@ [amazonica.aws.dynamodbv2 :as ddb] [amazonica.aws.elasticbeanstalk :as eb] [amazonica.aws.securitytoken :as st] - [java-time :as jt])) + [java-time.api :as jt])) (def operator-iam-spec {:role-arn "arn:aws:iam::357210185381:role/wb-names-test-system-operator" diff --git a/test/integration/merge_genes_test.clj b/test/integration/merge_genes_test.clj index 9d2de2be..44645048 100644 --- a/test/integration/merge_genes_test.clj +++ b/test/integration/merge_genes_test.clj @@ -2,7 +2,7 @@ (:require [clojure.test :as t] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [ring.util.http-predicates :as ru-hp] [wormbase.constdata :refer [elegans-ln]] [wormbase.db :as wdb] diff --git a/test/wormbase/db_testing.clj b/test/wormbase/db_testing.clj index c5e692fc..2e545f83 100644 --- a/test/wormbase/db_testing.clj +++ b/test/wormbase/db_testing.clj @@ -3,7 +3,7 @@ [clojure.core.cache :as cache] [datomock.core :as dm] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [mount.core :as mount] [wormbase.db :as wdb] [wormbase.db.schema :as schema])) diff --git a/test/wormbase/test_utils.clj b/test/wormbase/test_utils.clj index d5485a73..29faf982 100644 --- a/test/wormbase/test_utils.clj +++ b/test/wormbase/test_utils.clj @@ -6,7 +6,7 @@ [clojure.tools.logging :as log] [compojure.api.routes :as routes] [datomic.api :as d] - [java-time :as jt] + [java-time.api :as jt] [muuntaja.core :as muuntaja] [peridot.core :as p] [wormbase.constdata :refer [elegans-ln]]