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error building container #2

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hstern2 opened this issue Mar 17, 2022 · 1 comment
Open

error building container #2

hstern2 opened this issue Mar 17, 2022 · 1 comment

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@hstern2
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hstern2 commented Mar 17, 2022

Trying to build a container using this Dockerfile, but getting

Collecting numpy
  Downloading https://files.pythonhosted.org/packages/64/4a/b008d1f8a7b9f5206ecf70a53f84e654707e7616a771d84c05151a4713e9/numpy-1.22.3.zip (11.5MB)
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "", line 1, in 
      File "/tmp/pip-build-9Hp1fi/numpy/setup.py", line 59
        raise RuntimeError(f'Cannot parse version {FULLVERSION}')
                                                               ^
    SyntaxError: invalid syntax
    
    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-9Hp1fi/numpy/
You are using pip version 8.1.2, however version 22.0.4 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
The command '/bin/sh -c yum install -y epel-release &&  yum install -y python2-pip.noarch openblas-devel &&       pip2 install numpy &&   pip2 install nibabel==2.3.0 --install-option="--prefix=/export/HCP/epd-7.3.2" &&  yum clean packages &&   rm -rf /var/cache/yum/*' returned a non-zero code: 1
@coalsont
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That sounds like an issue installing numpy (without a specified version) in the given environment (which may be old and out of date).

This isn't our recommended way to run the pipelines, QuNex (https://qunex.yale.edu/) is the container setup we recommend and support. This repo may already be abandoned.

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