Skip to content

Latest commit

 

History

History
70 lines (66 loc) · 4.54 KB

MACCR_File_Guide.md

File metadata and controls

70 lines (66 loc) · 4.54 KB

Guide to Contents of the Metadata Acquired from Clinical Case Reports (MACCRs) Data File

Introduction

This Guide contains a list of data types contained within the MACCR data set. Most of these values correspond to those described as part of the annotation process; see the file Annotation_Guide.pdf for further details.

Fields may contain values of "NA" if no corresponding value for this category was found in or corresponding to a given document.

If not otherwise specified, values are those obtained from manual annotation, post-processed, and cleaned as specified in the Annotation Guide. For Disease Category columns, values are binary, with 1 indicating membership in the category and 0 indicating non-membership.

MACCR Data File contents

Column Title Contents
1 blank A number from zero to 2999 serving as an internal file index.
2 CR Number Internal ID. See Annotation Guide.
3 Access Date See Annotation Guide.
4 Total Score Sum of all scores for the full text document. See "Scoring and Template Usage" in Annotation Guide.
5 Identification Score Sum of all scores in the Document and Annotation Identification section for the full text document. See "Scoring and Template Usage" in Annotation Guide.
6 Title See Annotation Guide.
7 Authors See Annotation Guide.
8 Year Publication year. See Annotation Guide.
9 Journal Document source. See Annotation Guide.
10 Institution Affiliation of the corresponding author. See Annotation Guide.
11 PMID PubMed identifier of the document. See Annotation Guide.
12 DOI Digital Object Identifier of the document. See Annotation Guide.
13 Link URL to the document; generally through doi.org. If a DOI is not available, may take other formats. See Annotation Guide.
14 Medical Content Score Sum of all scores in the Medical Content section for the full text document. See "Scoring and Template Usage" in Annotation Guide.
15 Keywords See Annotation Guide.
16 Geographic Locations See Annotation Guide.
17 Life Style See Annotation Guide.
18 Family History See Annotation Guide.
19 Social History See Annotation Guide.
20 Medical/Surgical History See Annotation Guide.
21 Signs and Symptoms See Annotation Guide.
22 Comorbidities See Annotation Guide.
23 Diagnostic Techniques and Procedures See Annotation Guide.
24 Diagnosis See Annotation Guide.
25 Laboratory Values See Annotation Guide.
26 Pathology See Annotation Guide.
27 Pharmacological Therapy See Annotation Guide.
28 Interventional Therapy See Annotation Guide.
29 Patient Outcome Assessment See Annotation Guide.
30 Acknowledgements Score Sum of all scores in the Acknowledgements section for the full text document. See "Scoring and Template Usage" in Annotation Guide.
31 Funding Source See Annotation Guide.
32 Award Number See Annotation Guide.
33 Disclosures See Annotation Guide.
34 References Count of references included in the document. See Annotation Guide.
35 Age Numerical age in number of years. Patients less than one year of age are assigned an age value of zero. Determined from Demography annotation.
36 Gender May be Male, Female, or NA. Determined from Demography annotation.
37 Cancer Disease category.
38 Nervous System Diseases Disease category.
39 Cardiovascular Diseases See Annotation Guide.
40 Musculoskeletal Diseases and Rheumatological Diseases Disease category.
41 Digestive System Diseases Disease category.
42 Obstetrical and Gynecological Diseases Disease category.
43 Infectious Diseases Disease category.
44 Respiratory Tract Diseases Disease category.
45 Hematologic Diseases Disease category.
46 Kidney Diseases and Urologic Diseases Disease category.
47 Endocrine System Diseases Disease category.
48 Oral and Maxillofacial Diseases Disease category.
49 Ophthalmological Diseases Disease category.
50 Otorhinolaryngologic Diseases Disease category.
51 Skin Diseases Disease category.
52 Rare Diseases Disease category.
53 AllDiseaseSystems Set of all disease categories assigned to the document, as terms.
54 Images Count of clinical images in the document, not counting supplements.
55 Graphs or Illustrations Count of prepared graphs, figures, and illustrations in the document, not counting supplements.
56 Videos Count of videos and animations provided with the document.
57 Tables Count of tables in the document, not counting supplmentary tables.
58 Contributor Two-letter initials of the annotator for this document.