diff --git a/q2_asap/analyzeAmplicons_pipeline.py b/q2_asap/analyzeAmplicons_pipeline.py index 235f091..42483a8 100644 --- a/q2_asap/analyzeAmplicons_pipeline.py +++ b/q2_asap/analyzeAmplicons_pipeline.py @@ -23,8 +23,8 @@ def analyzeAmplicons_pipeline(ctx, sequences, ref_sequence, trimmer, aligner, config_file_path=config_fp) results.append(bam_processor_result) - #TODO: is this in pipeline? output_combiner_result, = output_combiner_action(xml_dir=bam_processor_result, run_name=run_name) results.append(output_combiner_result) return tuple(results) +