diff --git a/environment.yml b/environment.yml
index f0ef57d..462c7ae 100644
--- a/environment.yml
+++ b/environment.yml
@@ -11,6 +11,7 @@ dependencies:
   - alsa-lib=1.2.11
   - anyio=4.3.0
   - appdirs=1.4.4
+  - archspec=0.2.3
   - argon2-cffi=23.1.0
   - argon2-cffi-bindings=21.2.0
   - arrow=1.3.0
@@ -24,6 +25,7 @@ dependencies:
   - binutils_impl_linux-64=2.40
   - biom-format=2.1.15
   - bleach=6.1.0
+  - boltons=24.0.0
   - bowtie2=2.5.4
   - brotli-python=1.1.0
   - bwa=0.7.18
@@ -36,17 +38,26 @@ dependencies:
   - cairo=1.18.0
   - certifi=2024.7.4
   - cffi=1.16.0
+  - chardet=5.2.0
   - charset-normalizer=3.3.2
   - click=8.1.7
   - colorama=0.4.6
   - comm=0.2.2
+  - conda=24.7.1
+  - conda-build=24.7.1
+  - conda-index=0.5.0
+  - conda-libmamba-solver=24.7.0
   - conda-pack=0.7.0
+  - conda-package-handling=2.3.0
+  - conda-package-streaming=0.10.0
+  - conda-souschef=2.2.3
   - cryptography=42.0.7
   - curl=8.8.0
   - debugpy=1.8.1
   - decorator=4.4.2
   - defusedxml=0.7.1
   - dill=0.3.8
+  - distro=1.9.0
   - entrypoints=0.4
   - exceptiongroup=1.2.0
   - executing=2.0.1
@@ -54,6 +65,7 @@ dependencies:
   - filelock=3.14.0
   - flake8=7.1.0
   - flufl.lock=7.1
+  - fmt=10.2.1
   - font-ttf-dejavu-sans-mono=2.37
   - font-ttf-inconsolata=3.000
   - font-ttf-source-code-pro=2.038
@@ -64,11 +76,13 @@ dependencies:
   - fqdn=1.5.1
   - freetype=2.12.1
   - fribidi=1.0.10
+  - frozendict=2.4.4
   - gcc_impl_linux-64=13.2.0
   - gfortran_impl_linux-64=13.2.0
   - giflib=5.2.2
   - globus-sdk=3.41.0
   - graphite2=1.3.13
+  - grayskull=2.3.0
   - gxx_impl_linux-64=13.2.0
   - h5py=3.11.0
   - harfbuzz=8.5.0
@@ -90,6 +104,7 @@ dependencies:
   - jedi=0.19.1
   - jinja2=3.1.4
   - joblib=1.4.2
+  - jsonpatch=1.33
   - jsonpointer=2.4
   - jsonschema=4.22.0
   - jsonschema-specifications=2023.12.1
@@ -107,6 +122,7 @@ dependencies:
   - ld_impl_linux-64=2.40
   - lerc=4.0.0
   - libaec=1.1.3
+  - libarchive=3.7.4
   - libblas=3.9.0
   - libcblas=3.9.0
   - libcups=2.3.3
@@ -127,12 +143,16 @@ dependencies:
   - libjpeg-turbo=3.0.0
   - liblapack=3.9.0
   - liblapacke=3.9.0
+  - liblief=0.14.1
+  - libmamba=1.5.8
+  - libmambapy=1.5.8
   - libnghttp2=1.58.0
   - libnsl=2.0.1
   - libopenblas=0.3.27
   - libpng=1.6.43
   - libsanitizer=13.2.0
   - libsodium=1.0.18
+  - libsolv=0.7.29
   - libsqlite=3.45.3
   - libssh2=1.11.0
   - libstdcxx-devel_linux-64=13.2.0
@@ -148,11 +168,14 @@ dependencies:
   - lxml=5.2.2
   - lz4=4.3.3
   - lz4-c=1.9.4
+  - lzo=2.10
   - make=4.3
   - markupsafe=2.1.5
   - matplotlib-inline=0.1.7
   - mccabe=0.7.0
+  - menuinst=2.1.1
   - mistune=3.0.2
+  - more-itertools=10.4.0
   - mpi=1.0
   - natsort=8.4.0
   - nbclassic=1.1.0
@@ -175,6 +198,8 @@ dependencies:
   - paramiko=3.4.0
   - parsl=2024.4.15
   - parso=0.8.4
+  - patch=2.7.6
+  - patchelf=0.17.2
   - pbzip2=1.1.13
   - pcre2=10.43
   - perl=5.32.1
@@ -182,16 +207,21 @@ dependencies:
   - pickleshare=0.7.5
   - pip=24.0
   - pixman=0.43.2
+  - pkginfo=1.11.1
   - pkgutil-resolve-name=1.3.10
   - platformdirs=4.2.2
   - pluggy=1.5.0
+  - progressbar2=4.4.2
   - prometheus_client=0.20.0
   - prompt-toolkit=3.0.42
   - psutil=5.9.8
   - pthread-stubs=0.4
   - ptyprocess=0.7.0
   - pure_eval=0.2.2
+  - py-lief=0.14.1
+  - pybind11-abi=4
   - pycodestyle=2.12.0
+  - pycosat=0.6.6
   - pycparser=2.22
   - pyflakes=3.2.0
   - pygments=2.18.0
@@ -204,7 +234,9 @@ dependencies:
   - python-dateutil=2.9.0
   - python-fastjsonschema=2.19.1
   - python-json-logger=2.0.7
+  - python-libarchive-c=5.1
   - python-tzdata=2024.1
+  - python-utils=3.8.2
   - python_abi=3.9
   - pytz=2024.1
   - pyyaml=6.0.1
@@ -226,17 +258,25 @@ dependencies:
   - r-rlang=1.1.3
   - r-rprojroot=2.0.4
   - r-withr=3.0.0
+  - rapidfuzz=3.9.6
   - readline=8.2
   - referencing=0.35.1
+  - reproc=14.2.4.post0
+  - reproc-cpp=14.2.4.post0
   - requests=2.32.2
   - rfc3339-validator=0.1.4
   - rfc3986-validator=0.1.1
+  - ripgrep=14.1.0
   - rpds-py=0.18.1
+  - ruamel.yaml=0.18.6
+  - ruamel.yaml.clib=0.2.8
+  - ruamel.yaml.jinja2=0.2.4
   - samtools=1.20
   - scikit-bio=0.6.0
   - scikit-learn=1.4.2
   - scipy=1.13.0
   - sed=4.8
+  - semver=2.13.0
   - send2trash=1.8.3
   - setproctitle=1.3.3
   - setuptools=70.0.0
@@ -244,6 +284,7 @@ dependencies:
   - sniffio=1.3.1
   - soupsieve=2.5
   - stack_data=0.6.2
+  - stdlib-list=0.10.0
   - sysroot_linux-64=2.12
   - tbb=2021.12.0
   - tblib=3.0.0
@@ -253,8 +294,10 @@ dependencies:
   - tk=8.6.13
   - tktable=2.10
   - tomli=2.0.1
+  - tomli-w=1.0.0
   - tomlkit=0.12.5
   - tornado=6.4.1
+  - tqdm=4.66.5
   - traitlets=5.9.0
   - typeguard=4.2.1
   - types-python-dateutil=2.9.0.20240316
@@ -267,6 +310,7 @@ dependencies:
   - unifrac-binaries=1.4
   - uri-template=1.3.0
   - urllib3=2.2.1
+  - versioneer=0.29
   - wcwidth=0.2.13
   - webcolors=1.13
   - webencodings=0.5.1
@@ -293,12 +337,15 @@ dependencies:
   - xorg-xproto=7.0.31
   - xz=5.2.6
   - yaml=0.2.5
+  - yaml-cpp=0.8.0
   - zeromq=4.3.5
   - zipp=3.17.0
   - zlib=1.2.13
+  - zstandard=0.23.0
   - zstd=1.5.6
   - pip:
       - pysam==0.22.1
-      - git+https://github.com/TGenNorth/q2-aligners#egg=samUpdates
-      - git+https://github.com/TGenNorth/q2-nasp2-types#egg=bamUpdates
-      - git+https://github.com/TGenNorth/q2-trimmers
\ No newline at end of file
+      - q2-aligners==0.0.3.dev24+g020ed09
+      - q2-nasp2-types==0.0.5.dev8
+      - q2-trimmers==0+untagged.28.g1ca5334.dirty
+prefix: /home/nsylvester/miniconda3/envs/qiime2-q2-asap
diff --git a/pyproject.toml b/pyproject.toml
index 7a3ac71..1b23d98 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,299 +17,7 @@ dependencies = [
     "q2-nasp2-types@git+https://github.com/TGenNorth/q2-nasp2-types#egg=bamUpdates",
     "q2-aligners@git+https://github.com/TGenNorth/q2-aligners#egg=samUpdates",
     "q2-trimmers@git+https://github.com/TGenNorth/q2-trimmers",
-    "_libgcc_mutex = '0.1'",
-    "_openmp_mutex = '4.5'",
-    "_r-mutex = '1.0.1'",
-    "alsa-lib = '1.2.11'",
-    "anyio = '4.3.0'",
-    "appdirs = '1.4.4'",
-    "argon2-cffi = '23.1.0'",
-    "argon2-cffi-bindings = '21.2.0'",
-    "arrow = '1.3.0'",
-    "asttokens = '2.4.1'",
-    "atpublic = '3.0.1'",
-    "attrs = '23.2.0'",
-    "bbmap = '39.06'",
-    "bcrypt = '4.1.3'",
-    "beautifulsoup4 = '4.12.3'",
-    "bibtexparser = '1.4.1'",
-    "binutils_impl_linux-64 = '2.40'",
-    "biom-format = '2.1.15'",
-    "bleach = '6.1.0'",
-    "bowtie2 = '2.5.4'",
-    "brotli-python = '1.1.0'",
-    "bwa = '0.7.18'",
-    "bwidget = '1.9.14'",
-    "bzip2 = '1.0.8'",
-    "c-ares = '1.28.1'",
-    "ca-certificates = '2024.7.4'",
-    "cached-property = '1.5.2'",
-    "cached_property = '1.5.2'",
-    "cairo = '1.18.0'",
-    "certifi = '2024.7.4'",
-    "cffi = '1.16.0'",
-    "charset-normalizer = '3.3.2'",
-    "click = '8.1.7'",
-    "colorama = '0.4.6'",
-    "comm = '0.2.2'",
-    "conda-pack = '0.7.0'",
-    "cryptography = '42.0.7'",
-    "curl = '8.8.0'",
-    "debugpy = '1.8.1'",
-    "decorator = '4.4.2'",
-    "defusedxml = '0.7.1'",
-    "dill = '0.3.8'",
-    "entrypoints = '0.4'",
-    "exceptiongroup = '1.2.0'",
-    "executing = '2.0.1'",
-    "expat = '2.6.2'",
-    "filelock = '3.14.0'",
-    "flake8 = '7.1.0'",
-    "flufl.lock = '7.1'",
-    "font-ttf-dejavu-sans-mono = '2.37'",
-    "font-ttf-inconsolata = '3.000'",
-    "font-ttf-source-code-pro = '2.038'",
-    "font-ttf-ubuntu = '0.83'",
-    "fontconfig = '2.14.2'",
-    "fonts-conda-ecosystem = '1'",
-    "fonts-conda-forge = '1'",
-    "fqdn = '1.5.1'",
-    "freetype = '2.12.1'",
-    "fribidi = '1.0.10'",
-    "gcc_impl_linux-64 = '13.2.0'",
-    "gfortran_impl_linux-64 = '13.2.0'",
-    "giflib = '5.2.2'",
-    "globus-sdk = '3.41.0'",
-    "graphite2 = '1.3.13'",
-    "gxx_impl_linux-64 = '13.2.0'",
-    "h5py = '3.11.0'",
-    "harfbuzz = '8.5.0'",
-    "hdf5 = '1.14.3'",
-    "hdmedians = '0.14.2'",
-    "htslib = '1.20'",
-    "icu = '73.2'",
-    "idna = '3.7'",
-    "ijson = '3.2.3'",
-    "importlib-metadata = '7.1.0'",
-    "importlib_metadata = '7.1.0'",
-    "importlib_resources = '6.4.0'",
-    "iniconfig = '2.0.0'",
-    "iow = '1.0.5'",
-    "ipykernel = '6.29.3'",
-    "ipython = '8.18.1'",
-    "ipython_genutils = '0.2.0'",
-    "isoduration = '20.11.0'",
-    "jedi = '0.19.1'",
-    "jinja2 = '3.1.4'",
-    "joblib = '1.4.2'",
-    "jsonpointer = '2.4'",
-    "jsonschema = '4.22.0'",
-    "jsonschema-specifications = '2023.12.1'",
-    "jsonschema-with-format-nongpl = '4.22.0'",
-    "jupyter_client = '7.4.9'",
-    "jupyter_core = '5.7.2'",
-    "jupyter_events = '0.10.0'",
-    "jupyter_server = '2.14.0'",
-    "jupyter_server_terminals = '0.5.3'",
-    "jupyterlab_pygments = '0.3.0'",
-    "kernel-headers_linux-64 = '2.6.32'",
-    "keyutils = '1.6.1'",
-    "krb5 = '1.21.2'",
-    "lcms2 = '2.16'",
-    "ld_impl_linux-64 = '2.40'",
-    "lerc = '4.0.0'",
-    "libaec = '1.1.3'",
-    "libblas = '3.9.0'",
-    "libcblas = '3.9.0'",
-    "libcups = '2.3.3'",
-    "libcurl = '8.8.0'",
-    "libdeflate = '1.20'",
-    "libedit = '3.1.20191231'",
-    "libev = '4.33'",
-    "libexpat = '2.6.2'",
-    "libffi = '3.4.2'",
-    "libgcc-devel_linux-64 = '13.2.0'",
-    "libgcc-ng = '13.2.0'",
-    "libgfortran-ng = '13.2.0'",
-    "libgfortran5 = '13.2.0'",
-    "libglib = '2.80.2'",
-    "libgomp = '13.2.0'",
-    "libhwloc = '2.11.1'",
-    "libiconv = '1.17'",
-    "libjpeg-turbo = '3.0.0'",
-    "liblapack = '3.9.0'",
-    "liblapacke = '3.9.0'",
-    "libnghttp2 = '1.58.0'",
-    "libnsl = '2.0.1'",
-    "libopenblas = '0.3.27'",
-    "libpng = '1.6.43'",
-    "libsanitizer = '13.2.0'",
-    "libsodium = '1.0.18'",
-    "libsqlite = '3.45.3'",
-    "libssh2 = '1.11.0'",
-    "libstdcxx-devel_linux-64 = '13.2.0'",
-    "libstdcxx-ng = '13.2.0'",
-    "libtiff = '4.6.0'",
-    "libuuid = '2.38.1'",
-    "libwebp-base = '1.4.0'",
-    "libxcb = '1.15'",
-    "libxcrypt = '4.4.36'",
-    "libxml2 = '2.12.7'",
-    "libxslt = '1.1.39'",
-    "libzlib = '1.2.13'",
-    "lxml = '5.2.2'",
-    "lz4 = '4.3.3'",
-    "lz4-c = '1.9.4'",
-    "make = '4.3'",
-    "markupsafe = '2.1.5'",
-    "matplotlib-inline = '0.1.7'",
-    "mccabe = '0.7.0'",
-    "mistune = '3.0.2'",
-    "mpi = '1.0'",
-    "natsort = '8.4.0'",
-    "nbclassic = '1.1.0'",
-    "nbclient = '0.10.0'",
-    "nbconvert-core = '7.16.4'",
-    "nbformat = '5.10.4'",
-    "ncurses = '6.5'",
-    "nest-asyncio = '1.6.0'",
-    "networkx = '3.1'",
-    "notebook = '6.5.5'",
-    "notebook-shim = '0.2.4'",
-    "numpy = '1.26.4'",
-    "openjdk = '22.0.1'",
-    "openssl = '3.3.1'",
-    "overrides = '7.7.0'",
-    "packaging = '24.0'",
-    "pandas = '2.2.2'",
-    "pandocfilters = '1.5.0'",
-    "pango = '1.52.2'",
-    "paramiko = '3.4.0'",
-    "parsl = '2024.4.15'",
-    "parso = '0.8.4'",
-    "pbzip2 = '1.1.13'",
-    "pcre2 = '10.43'",
-    "perl = '5.32.1'",
-    "pexpect = '4.9.0'",
-    "pickleshare = '0.7.5'",
-    "pip = '24.0'",
-    "pixman = '0.43.2'",
-    "pkgutil-resolve-name = '1.3.10'",
-    "platformdirs = '4.2.2'",
-    "pluggy = '1.5.0'",
-    "prometheus_client = '0.20.0'",
-    "prompt-toolkit = '3.0.42'",
-    "psutil = '5.9.8'",
-    "pthread-stubs = '0.4'",
-    "ptyprocess = '0.7.0'",
-    "pure_eval = '0.2.2'",
-    "pycodestyle = '2.12.0'",
-    "pycparser = '2.22'",
-    "pyflakes = '3.2.0'",
-    "pygments = '2.18.0'",
-    "pyjwt = '2.8.0'",
-    "pynacl = '1.5.0'",
-    "pyparsing = '3.1.2'",
-    "pysocks = '1.7.1'",
-    "pytest = '8.3.2'",
-    "python = '3.9.19'",
-    "python-dateutil = '2.9.0'",
-    "python-fastjsonschema = '2.19.1'",
-    "python-json-logger = '2.0.7'",
-    "python-tzdata = '2024.1'",
-    "python_abi = '3.9'",
-    "pytz = '2024.1'",
-    "pyyaml = '6.0.1'",
-    "pyzmq = '24.0.1'",
-    "q2-mystery-stew = '2024.5.0'",
-    "q2-types = '2024.5.0'",
-    "q2cli = '2024.5.0'",
-    "qiime2 = '2024.5.0'",
-    "r-base = '4.3.3'",
-    "r-here = '1.0.1'",
-    "r-jsonlite = '1.8.8'",
-    "r-lattice = '0.22_6'",
-    "r-matrix = '1.6_5'",
-    "r-png = '0.1_8'",
-    "r-rappdirs = '0.3.3'",
-    "r-rcpp = '1.0.12'",
-    "r-rcpptoml = '0.2.2'",
-    "r-reticulate = '1.36.0'",
-    "r-rlang = '1.1.3'",
-    "r-rprojroot = '2.0.4'",
-    "r-withr = '3.0.0'",
-    "readline = '8.2'",
-    "referencing = '0.35.1'",
-    "requests = '2.32.2'",
-    "rfc3339-validator = '0.1.4'",
-    "rfc3986-validator = '0.1.1'",
-    "rpds-py = '0.18.1'",
-    "samtools = '1.20'",
-    "scikit-bio = '0.6.0'",
-    "scikit-learn = '1.4.2'",
-    "scipy = '1.13.0'",
-    "sed = '4.8'",
-    "send2trash = '1.8.3'",
-    "setproctitle = '1.3.3'",
-    "setuptools = '70.0.0'",
-    "six = '1.16.0'",
-    "sniffio = '1.3.1'",
-    "soupsieve = '2.5'",
-    "stack_data = '0.6.2'",
-    "sysroot_linux-64 = '2.12'",
-    "tbb = '2021.12.0'",
-    "tblib = '3.0.0'",
-    "terminado = '0.18.1'",
-    "threadpoolctl = '3.5.0'",
-    "tinycss2 = '1.3.0'",
-    "tk = '8.6.13'",
-    "tktable = '2.10'",
-    "tomli = '2.0.1'",
-    "tomlkit = '0.12.5'",
-    "tornado = '6.4.1'",
-    "traitlets = '5.9.0'",
-    "typeguard = '4.2.1'",
-    "types-python-dateutil = '2.9.0.20240316'",
-    "typing-extensions = '4.11.0'",
-    "typing_extensions = '4.11.0'",
-    "typing_utils = '0.1.0'",
-    "tzdata = '2024a'",
-    "tzlocal = '2.1'",
-    "unifrac = '1.3'",
-    "unifrac-binaries = '1.4'",
-    "uri-template = '1.3.0'",
-    "urllib3 = '2.2.1'",
-    "wcwidth = '0.2.13'",
-    "webcolors = '1.13'",
-    "webencodings = '0.5.1'",
-    "websocket-client = '1.8.0'",
-    "wheel = '0.43.0'",
-    "xmltodict = '0.13.0'",
-    "xorg-fixesproto = '5.0'",
-    "xorg-inputproto = '2.3.2'",
-    "xorg-kbproto = '1.0.7'",
-    "xorg-libice = '1.1.1'",
-    "xorg-libsm = '1.2.4'",
-    "xorg-libx11 = '1.8.9'",
-    "xorg-libxau = '1.0.11'",
-    "xorg-libxdmcp = '1.1.3'",
-    "xorg-libxext = '1.3.4'",
-    "xorg-libxfixes = '5.0.3'",
-    "xorg-libxi = '1.7.10'",
-    "xorg-libxrender = '0.9.11'",
-    "xorg-libxt = '1.3.0'",
-    "xorg-libxtst = '1.2.3'",
-    "xorg-recordproto = '1.14.2'",
-    "xorg-renderproto = '0.11.1'",
-    "xorg-xextproto = '7.3.0'",
-    "xorg-xproto = '7.0.31'",
-    "xz = '5.2.6'",
-    "yaml = '0.2.5'",
-    "zeromq = '4.3.5'",
-    "zipp = '3.17.0'",
-    "zlib = '1.2.13'",
-    "zstd = '1.5.6'",
-    "pip::pysam == '0.22.1'"
+    "pip::pysam == 0.22.1"
 ]
 
 [tool.setuptools.packages]