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environment.yml
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name: notebook
channels:
- conda-forge
- bioconda
- defaults
- conda-forge/label/broken
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.1=anacondar_1
- alembic=1.1.0=py_0
- asn1crypto=0.24.0=py37_1003
- async_generator=1.10=py_0
- attrs=19.1.0=py_0
- backcall=0.1.0=py_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_8
- bioconductor-annotate=1.60.1=r351_0
- bioconductor-annotationdbi=1.44.0=r351_0
- bioconductor-biobase=2.42.0=r351h14c3975_1
- bioconductor-biocgenerics=0.28.0=r351_1
- bioconductor-biocparallel=1.16.6=r351h1c2f66e_0
- bioconductor-biomart=2.38.0=r351_0
- bioconductor-delayedarray=0.8.0=r351h14c3975_0
- bioconductor-deseq2=1.22.1=r351hf484d3e_0
- bioconductor-edger=3.24.3=r351hf484d3e_0
- bioconductor-genefilter=1.64.0=r351h1c2f66e_1
- bioconductor-geneplotter=1.60.0=r351_0
- bioconductor-genomeinfodb=1.18.1=r351_0
- bioconductor-genomeinfodbdata=1.2.1=r351_0
- bioconductor-genomicranges=1.34.0=r351h14c3975_0
- bioconductor-impute=1.56.0=r351h9ac9557_0
- bioconductor-iranges=2.16.0=r351h14c3975_0
- bioconductor-limma=3.38.3=r351h14c3975_0
- bioconductor-pcamethods=1.74.0=r351hf484d3e_0
- bioconductor-s4vectors=0.20.1=r351h14c3975_0
- bioconductor-scde=2.10.0=r351hf484d3e_0
- bioconductor-summarizedexperiment=1.12.0=r351_0
- bioconductor-tscan=1.22.0=r351_0
- bioconductor-xvector=0.22.0=r351h14c3975_0
- bioconductor-zlibbioc=1.28.0=r351h14c3975_0
- bleach=3.1.0=py_0
- blinker=1.4=py_1
- bwidget=1.9.11=0
- bzip2=1.0.8=h516909a_1
- ca-certificates=2019.9.11=hecc5488_0
- cairo=1.16.0=hfb77d84_1002
- certifi=2019.9.11=py37_0
- certipy=0.1.3=py_0
- cffi=1.12.3=py37h8022711_0
- chardet=3.0.4=py37_1003
- configurable-http-proxy=4.1.0=node11_1
- cryptography=2.7=py37h72c5cf5_0
- curl=7.65.3=hf8cf82a_0
- decorator=4.4.0=py_0
- defusedxml=0.5.0=py_1
- entrypoints=0.3=py37_1000
- fontconfig=2.13.1=h86ecdb6_1001
- freetype=2.10.0=he983fc9_1
- fribidi=1.0.5=h516909a_1002
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_8
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_8
- glib=2.58.3=h6f030ca_1002
- graphite2=1.3.13=hf484d3e_1000
- gsl=2.5=h294904e_1
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_8
- harfbuzz=2.4.0=h9f30f68_3
- icu=64.2=he1b5a44_1
- idna=2.8=py37_1000
- ipykernel=5.1.2=py37h5ca1d4c_0
- ipython=7.8.0=py37h5ca1d4c_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.4.2=py_0
- jedi=0.15.1=py37_0
- jinja2=2.10.1=py_0
- jpeg=9c=h14c3975_1001
- jsonschema=3.0.2=py37_0
- jupyter_client=5.3.1=py_0
- jupyter_core=4.4.0=py_0
- jupyterhub=1.0.0=py37_0
- jupyterlab=0.35.4=py37_0
- jupyterlab_server=0.2.0=py_0
- krb5=1.16.3=h05b26f9_1001
- libblas=3.8.0=12_openblas
- libcblas=3.8.0=12_openblas
- libcurl=7.65.3=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- libopenblas=0.3.7=h6e990d7_1
- libpng=1.6.37=hed695b0_0
- libsodium=1.0.17=h516909a_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.0.10=h57b8799_1003
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=hee79883_5
- lz4-c=1.8.3=he1b5a44_1001
- make=4.2.1=h14c3975_2004
- mako=1.1.0=py_0
- markupsafe=1.1.1=py37h14c3975_0
- mistune=0.8.4=py37h14c3975_1000
- nbconvert=5.4.1=py_2
- nbformat=4.4.0=py_1
- ncurses=6.1=hf484d3e_1002
- nodejs=11.14.0=he1b5a44_1
- notebook=5.7.8=py37_1
- nteract_on_jupyter=2.1.3=py_0
- oauthlib=3.0.1=py_0
- openjdk=8.0.192=h14c3975_1003
- openssl=1.1.1d=h516909a_0
- pamela=1.0.0=py_0
- pandoc=2.7.3=0
- pandocfilters=1.4.2=py_1
- pango=1.42.4=ha030887_1
- parso=0.5.1=py_0
- pcre=8.41=hf484d3e_1003
- pexpect=4.7.0=py37_0
- pickleshare=0.7.5=py37_1000
- pip=19.2.3=py37_0
- pixman=0.38.0=h516909a_1003
- prometheus_client=0.7.1=py_0
- prompt_toolkit=2.0.9=py_0
- pthread-stubs=0.4=h14c3975_1001
- ptyprocess=0.6.0=py_1001
- pycparser=2.19=py37_1
- pycurl=7.43.0.2=py37h16ce93b_1
- pygments=2.4.2=py_0
- pyjwt=1.7.1=py_0
- pyopenssl=19.0.0=py37_0
- pyrsistent=0.15.4=py37h516909a_0
- pysocks=1.7.0=py37_0
- python=3.7.3=h33d41f4_1
- python-dateutil=2.8.0=py_0
- python-editor=1.0.4=py_0
- pyzmq=18.1.0=py37h1768529_0
- r=3.5.1=r35_1003
- r-abind=1.4_5=r35h6115d3f_1002
- r-acepack=1.4.1=r35h9bbef5b_1004
- r-amap=0.8_16=r35h6786f55_1002
- r-askpass=1.1=r35hcdcec82_1
- r-assertthat=0.2.1=r35h6115d3f_1
- r-backports=1.1.4=r35hcdcec82_1
- r-base=3.5.1=hbc19587_1011
- r-base64enc=0.1_3=r35hcdcec82_1003
- r-bh=1.69.0_1=r35h6115d3f_1
- r-bit=1.1_14=r35hcdcec82_1
- r-bit64=0.9_7=r35hcdcec82_1001
- r-bitops=1.0_6=r35hcdcec82_1003
- r-blob=1.2.0=r35_1
- r-boot=1.3_23=r35h6115d3f_2
- r-brew=1.0_6=r35h6115d3f_1002
- r-broom=0.5.2=r35h6115d3f_1
- r-cairo=1.5_10=r35hcdcec82_1
- r-calibrate=1.7.2=r35_1002
- r-callr=3.3.1=r35h6115d3f_0
- r-car=3.0_3=r35h6115d3f_1
- r-cardata=3.0_2=r35h6115d3f_1
- r-catools=1.17.1.2=r35h0357c0b_1
- r-cellranger=1.1.0=r35h6115d3f_1002
- r-checkmate=1.9.4=r35hcdcec82_1
- r-class=7.3_15=r35hcdcec82_1001
- r-cli=1.1.0=r35h6115d3f_2
- r-clipr=0.7.0=r35h6115d3f_0
- r-cluster=2.1.0=r35h9bbef5b_2
- r-codetools=0.2_16=r35h6115d3f_1001
- r-colorspace=1.4_1=r35hcdcec82_1
- r-combinat=0.0_8=r35h6115d3f_1002
- r-crayon=1.3.4=r35h6115d3f_1002
- r-curl=4.1=r35hcdcec82_0
- r-data.table=1.12.2=r35hcdcec82_1
- r-dbi=1.0.0=r35h6115d3f_1002
- r-dbplyr=1.4.2=r35h6115d3f_1
- r-deoptimr=1.0_8=r35h6115d3f_1002
- r-digest=0.6.20=r35h0357c0b_1
- r-diptest=0.75_7=r35hcdcec82_1002
- r-distillery=1.0_6=r35h6115d3f_2
- r-dplyr=0.8.3=r35h0357c0b_3
- r-ellipsis=0.2.0.1=r35hcdcec82_1
- r-enrichr=2.1=r35h6115d3f_0
- r-evaluate=0.14=r35h6115d3f_1
- r-extremes=2.0_10=r35h516909a_1
- r-fansi=0.4.0=r35hcdcec82_1001
- r-fastica=1.2_2=r35hcdcec82_0
- r-flexmix=2.3_15=r35h6115d3f_1
- r-forcats=0.4.0=r35h6115d3f_1
- r-foreign=0.8_72=r35hcdcec82_0
- r-formatr=1.7=r35h6115d3f_1
- r-formula=1.2_3=r35h6115d3f_1002
- r-fpc=2.2_3=r35h6115d3f_1
- r-fs=1.3.1=r35h0357c0b_1
- r-futile.logger=1.4.3=r35h6115d3f_1002
- r-futile.options=1.0.1=r35h6115d3f_1001
- r-gdata=2.18.0=r35h6115d3f_1002
- r-generics=0.0.2=r35h6115d3f_1002
- r-ggplot2=3.2.1=r35h6115d3f_0
- r-glue=1.3.1=r35hcdcec82_1
- r-gplots=3.0.1.1=r35h6115d3f_1
- r-gridextra=2.3=r35h6115d3f_1002
- r-gsa=1.03.1=r35_1
- r-gtable=0.3.0=r35h6115d3f_2
- r-gtools=3.8.1=r35hcdcec82_1003
- r-haven=2.1.1=r35hde08347_2
- r-highr=0.8=r35h6115d3f_1
- r-hmisc=4.2_0=r35h9bbef5b_2
- r-hms=0.5.1=r35h6115d3f_0
- r-htmltable=1.13.1=r35h6115d3f_1001
- r-htmltools=0.3.6=r35he1b5a44_1003
- r-htmlwidgets=1.3=r35h6115d3f_1001
- r-httpuv=1.5.2=r35h0357c0b_1
- r-httr=1.4.1=r35h6115d3f_1
- r-igraph=1.2.4.1=r35h6786f55_2
- r-inum=1.0_1=r35h6115d3f_1
- r-irdisplay=0.7=r35_1001
- r-irkernel=1.0.2=r35h6115d3f_2
- r-jsonlite=1.6=r35hcdcec82_1001
- r-kernlab=0.9_27=r35h0357c0b_1001
- r-kernsmooth=2.23_15=r35h9bbef5b_1004
- r-knitr=1.24=r35h6115d3f_0
- r-labeling=0.3=r35h6115d3f_1002
- r-lambda.r=1.2.4=r35h6115d3f_0
- r-later=0.8.0=r35h0357c0b_2
- r-lattice=0.20_38=r35hcdcec82_1002
- r-latticeextra=0.6_28=r35h6115d3f_1002
- r-lazyeval=0.2.2=r35hcdcec82_1
- r-libcoin=1.0_5=r35hcdcec82_0
- r-lifecycle=0.1.0=r35h6115d3f_0
- r-lme4=1.1_21=r35h0357c0b_1
- r-lmoments=1.3_1=r35h0357c0b_1
- r-locfit=1.5_9.1=r35h516909a_1004
- r-lubridate=1.7.4=r35h0357c0b_1002
- r-magrittr=1.5=r35h6115d3f_1002
- r-maptools=0.9_5=r35hcdcec82_1
- r-markdown=1.1=r35hcdcec82_0
- r-mass=7.3_51.4=r35hcdcec82_1
- r-matrix=1.2_17=r35hcdcec82_1
- r-matrixmodels=0.4_1=r35h6115d3f_1002
- r-matrixstats=0.55.0=r35hcdcec82_0
- r-mclust=5.4.5=r35h9bbef5b_0
- r-memoise=1.1.0=r35h6115d3f_1003
- r-mgcv=1.8_28=r35hcdcec82_1
- r-mime=0.7=r35hcdcec82_1
- r-minqa=1.2.4=r35h6786f55_1004
- r-modelr=0.1.5=r35h6115d3f_0
- r-modeltools=0.2_22=r35h6115d3f_1002
- r-munsell=0.5.0=r35h6115d3f_1002
- r-mvtnorm=1.0_11=r35h9bbef5b_2
- r-nlme=3.1_141=r35h9bbef5b_1
- r-nloptr=1.2.1=r35h0357c0b_1
- r-nnet=7.3_12=r35hcdcec82_1003
- r-openssl=1.4.1=r35h9c8475f_0
- r-openxlsx=4.1.0.1=r35h0357c0b_1
- r-partykit=1.2_5=r35hcdcec82_0
- r-pbdzmq=0.3_3=r35h559a7a4_1002
- r-pbkrtest=0.4_7=r35h6115d3f_1002
- r-pheatmap=1.0.12=r35h6115d3f_1
- r-pillar=1.4.2=r35h6115d3f_2
- r-pkgconfig=2.0.2=r35h6115d3f_1003
- r-plogr=0.2.0=r35h6115d3f_1002
- r-plyr=1.8.4=r35h0357c0b_1003
- r-png=0.1_7=r35hcdcec82_1003
- r-prabclus=2.3_1=r35h6115d3f_1
- r-prettyunits=1.0.2=r35h6115d3f_1002
- r-processx=3.4.1=r35hcdcec82_0
- r-progress=1.2.2=r35h6115d3f_1
- r-promises=1.0.1=r35h0357c0b_1001
- r-ps=1.3.0=r35hcdcec82_1001
- r-purrr=0.3.2=r35hcdcec82_1
- r-quantreg=5.51=r35h9bbef5b_0
- r-r6=2.4.0=r35h6115d3f_2
- r-rcolorbrewer=1.1_2=r35h6115d3f_1002
- r-rcpp=1.0.2=r35h0357c0b_0
- r-rcpparmadillo=0.9.700.2.0=r35h0357c0b_0
- r-rcppeigen=0.3.3.5.0=r35h0357c0b_1
- r-rcurl=1.95_4.12=r35hcdcec82_1
- r-readr=1.3.1=r35h0357c0b_1002
- r-readxl=1.3.1=r35h0357c0b_1
- r-recommended=3.5.1=r35_1003
- r-rematch=1.0.1=r35h6115d3f_1002
- r-repr=1.0.1=r35h6115d3f_1
- r-reprex=0.3.0=r35h6115d3f_1
- r-reshape2=1.4.3=r35h0357c0b_1004
- r-rio=0.5.16=r35h6115d3f_1001
- r-rjava=0.9_11=r35hcdcec82_1
- r-rjson=0.2.20=r35h0357c0b_1001
- r-rlang=0.4.0=r35hcdcec82_1
- r-rmarkdown=1.15=r35h6115d3f_0
- r-rmtstat=0.3=r35_1002
- r-robustbase=0.93_5=r35h9bbef5b_2
- r-rook=1.1_1=r35hcdcec82_1003
- r-rpart=4.1_15=r35hcdcec82_1
- r-rpart.plot=3.0.8=r35h6115d3f_0
- r-rsqlite=2.1.2=r35h0357c0b_1
- r-rstudioapi=0.10=r35h6115d3f_2
- r-rvest=0.3.4=r35h6115d3f_1
- r-rweka=0.4_40=r35h6115d3f_1
- r-rwekajars=3.9.3_1=r35h6115d3f_1
- r-samr=3.0=r351h14c3975_0
- r-scales=1.0.0=r35h0357c0b_1002
- r-selectr=0.4_1=r35h6115d3f_1001
- r-shiny=1.3.2=r35h6115d3f_1
- r-shinyfiles=0.7.3=r35_1
- r-snow=0.4_3=r35h6115d3f_1001
- r-sourcetools=0.1.7=r35he1b5a44_1001
- r-sp=1.3_1=r35hcdcec82_1001
- r-sparsem=1.77=r35h9bbef5b_1003
- r-spatial=7.3_11=r35hcdcec82_1003
- r-statmod=1.4.32=r35h6e990d7_2
- r-stringi=1.4.3=r35h0e574ca_3
- r-stringr=1.4.0=r35h6115d3f_1
- r-survival=2.44_1.1=r35hcdcec82_1
- r-sys=3.3=r35hcdcec82_0
- r-tibble=2.1.3=r35hcdcec82_1
- r-tidyr=1.0.0=r35h0357c0b_0
- r-tidyselect=0.2.5=r35h0357c0b_1001
- r-tidyverse=1.2.1=r35h6115d3f_1002
- r-tinytex=0.16=r35h6115d3f_0
- r-tsne=0.1_3=r35_1002
- r-utf8=1.1.4=r35hcdcec82_1001
- r-uuid=0.1_2=r35hcdcec82_1002
- r-vctrs=0.2.0=r35hcdcec82_1
- r-viridis=0.5.1=r35h6115d3f_1003
- r-viridislite=0.3.0=r35h6115d3f_1002
- r-whisker=0.4=r35h6115d3f_0
- r-withr=2.1.2=r35h6115d3f_1001
- r-xfun=0.9=r35h6115d3f_0
- r-xml=3.98_1.20=r35hcdcec82_1
- r-xml2=1.2.2=r35h0357c0b_0
- r-xtable=1.8_4=r35h6115d3f_2
- r-yaml=2.2.0=r35hcdcec82_1002
- r-zeallot=0.1.0=r35h6115d3f_1001
- r-zip=2.0.4=r35hcdcec82_0
- readline=8.0=hf8c457e_0
- requests=2.22.0=py37_1
- send2trash=1.5.0=py_0
- setuptools=41.2.0=py37_0
- six=1.12.0=py37_1000
- sqlalchemy=1.3.8=py37h516909a_0
- sqlite=3.29.0=hcee41ef_1
- terminado=0.8.2=py37_0
- testpath=0.4.2=py_1001
- tk=8.6.9=hed695b0_1003
- tktable=2.10=h555a92e_2
- tornado=6.0.3=py37h516909a_0
- traitlets=4.3.2=py37_1000
- urllib3=1.25.3=py37_0
- wcwidth=0.1.7=py_1
- webencodings=0.5.1=py_1
- wheel=0.33.6=py37_0
- widgetsnbextension=3.4.2=py37_1000
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.8=h516909a_0
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.2.0=h516909a_0
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- zeromq=4.3.2=he1b5a44_2
- zlib=1.2.11=h516909a_1006
- zstd=1.4.0=h3b9ef0a_0