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Split input fastq files but not on the head node #5

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somalee opened this issue May 7, 2013 · 0 comments
Open

Split input fastq files but not on the head node #5

somalee opened this issue May 7, 2013 · 0 comments
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@somalee
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somalee commented May 7, 2013

Currently, the fastq files are split on the local node on which jobs are launched. In a typical head/worker env, this splitting ends up taking resources on the head node and thus has significant performance implication.

Current workaround is to split the fastq files separately ahead of time.

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