From 508b144003ed2843842925766f5ae30b0193c26a Mon Sep 17 00:00:00 2001 From: DonFreed Date: Thu, 15 Feb 2024 12:45:55 -0800 Subject: [PATCH] Add back a missing `run()` --- sentieon_cli/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/sentieon_cli/__init__.py b/sentieon_cli/__init__.py index 7a22e97..89aa6b4 100644 --- a/sentieon_cli/__init__.py +++ b/sentieon_cli/__init__.py @@ -299,7 +299,7 @@ def dnascope_longread( read_flag_mask="drop=supplementary", ) ) - shlex.join(driver.build_cmd()) + run(shlex.join(driver.build_cmd())) run( f"bcftools view -T {unphased_bed} {phased_vcf} \