diff --git a/README.md b/README.md index 382f9dd..808048d 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,9 @@ # MetaMLST # A computational pipeline for MLST typing from metagenomic data -MetaMLST performs an *in-silico* Multi Locus Sequence Typing (MLST) Analysis on metagenomic samples. MetaMLST achieves cultivation- and assembly- free strain level tracking and detects all the species to which the standard MLST protocol is applicable. +MetaMLST performs an *in-silico* Multi Locus Sequence Typing (MLST) Analysis on metagenomic samples, directly from raw reads. MetaMLST achieves cultivation- and assembly- free strain level tracking and profiles all the species to which the standard MLST protocol is applicable. + +**Current database version**: [ May 2022 ] ### What can I use MetaMLST for? ### diff --git a/metaMLST_functions.py b/metaMLST_functions.py index 105b055..829041a 100644 --- a/metaMLST_functions.py +++ b/metaMLST_functions.py @@ -25,8 +25,8 @@ from io import StringIO __author__ = 'Moreno Zolfo (moreno.zolfo@unitn.it)' -__version__ = '1.2.2' -__date__ = '29 December 2020' +__version__ = '1.2.3' +__date__ = '27 May 2022' def byte_to_megabyte(byte): """ @@ -38,9 +38,9 @@ def byte_to_megabyte(byte): def check_install(): import zipfile,os - METAMLST_DBPATH=os.path.abspath(os.path.dirname(__file__))+'/metamlst_databases/metamlstDB_2021.db' + METAMLST_DBPATH=os.path.abspath(os.path.dirname(__file__))+'/metamlst_databases/metamlstDB_2022.db' METAMLST_DBFOLDER=os.path.abspath(os.path.dirname(__file__))+'/metamlst_databases/' - METAMLST_URL='https://zenodo.org/record/4399251/files/metamlstDB_2021.db.zip?download=1' + METAMLST_URL='https://zenodo.org/record/6586741/files/metamlstDB_2022.db.zip?download=1' if not os.path.isdir(METAMLST_DBFOLDER): os.mkdir(METAMLST_DBFOLDER,mode=0o775)