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Changelog

1.5.3 (2022-11-02)

Bug Fixes

  • adding copy method to geological feature (01651cb)
  • adding debugging page to doc index (a09aa0d)
  • adding interpolation back to builder (1a537aa)
  • allow regularisation to be set for faults using processor (07920dc)
  • model set for fault segment (3eb0328)
  • remove prints while solving (3aae8a9)
  • removing theano from docs docker (a706575)
  • tolerance geological modle (fbc7e4a)
  • updating dockerfile (70ea4f7)
  • updating dockerfile so that it builds (0e5482a)

Documentation

  • adding more documentation on structural frames and faults (2fab248)
  • path for fault frame image (921cd19)

1.5.2 (2022-10-11)

Bug Fixes

  • adding BaseBuilder to builders init (7f56fdd)
  • adding checks for data size in interpolator (ea8ccca)
  • adding old auto_examples directory (cefe790)
  • code review for intrusions (debc391)
  • creating basebuilder (3480e3d)
  • feature builder sets interpolator interpolation__region (520cc01)
  • formatting (9cb79cb)
  • starting unit id @ 1 means basement =0 (ba627bb)

Documentation

  • adding basic testing guideline (7c6ccef)
  • adding docstrings (ffe9614)
  • adding geopandas to documentation docker (ab443ab)
  • adding links to kwargs in docstring (6e3a6e2)
  • fixed bug with documentation not being generated (994d5dc)

1.5.1 (2022-09-15)

Bug Fixes

1.5.0 (2022-09-14)

Features

  • bump version to test release-please (08d380d)

Bug Fixes

  • setting versionfile for version.py (6fc564e)

Documentation

  • adding example for local weight change (9a8f773)

1.4.13 (2022-08-29)

Bug Fixes

  • removing example that crashes docs (63a9ce9)

1.4.12 (2022-08-27)

Bug Fixes

  • enabling fault network example (5560d3f)
  • failfast in strategy (2f3304e)
  • path to copy change log (c061755)

1.4.11 (2022-08-10)

Bug Fixes

  • add data for structural frame, adds data for all coordinates (6ebdf84)
  • adding new dataset for fault, map in installer (b32edf3)
  • basal unconformities cropping lowest surface (5c47ef6)
  • faults not added to features because using string not enum (faf71ee)
  • faults were not faulting unconformities (ec520fa)
  • geological map example stratigraphic order loaded incorrectly (b98397b)
  • single group surfaces not plotting, changed min strat column to 0 (44481a3)

1.4.10 (2022-07-20)

Bug Fixes

  • 🐛 unconformities weren't working. (304335d)
  • adding loopjson encoder (ec1b84e)
  • adding more informative errors to p2 tetra (c63cae7)
  • adding python alternatives for cg and fold cg (5ffef3b)
  • catch all exceptions, raise import (a071416)
  • catch dfi import error (f9c8aa0)
  • catch modulenotfound raise importerror (836ee84)
  • don't add unconformity if base feature is None (be4d8ac)
  • faults enabled bug, ~ does not flip boolean, changing to not (0c68788)
  • feature type enums renaming (616b554)
  • featuretype enum (c256746)
  • fold cg (a35f41a)
  • lavavu.camera bug when keys are missing (b554c3c)
  • missing enum (bc34bb4)
  • model plotter uses BaseFeature to check type (a2bd0f0)
  • pli import is optional (6347742)
  • raise error if cython can't be imported (f5b82eb)
  • recursive error fix (f3180f3)
  • renaming enums to be consistent with calls (57ed443)
  • unconformities causing nan slicing due to recurvsive error (728fc5f)

Documentation

  • 📝 added example for plotting unconformities (bad53a0)
  • fixing new documentation so that data can be loaded (7ac5a0d)
  • missing variable (7df88a2)
  • renaming cython to _cython so its not included in docs (27e88a1)
  • trying to ignore cython (6582d0c)
  • updating documentation (493beea)
  • using docker to build docs (f499aae)

1.4.9 (2022-05-05)

Documentation

1.4.8 (2022-05-05)

Bug Fixes

  • 🐛 faults where feature name given not fault_name were crashing (dae9e92)

Documentation

  • adding geopandas to doc test (b6613a9)
  • fixing fault network example (6f4f2fc)
  • refactoring documentation + adding new example (d15ba6c)

1.4.7 (2022-05-04)

Bug Fixes

  • 🐛 fault function attribute is now a property accessor (3b9cc2e)
  • ⚡ flag not uptodate when build arguments change (6f80029)
  • changing import error message to warning (de22530)
  • fold frame bug for refolded folds (bf272d1)
  • if downthrow not provided estimate abutting direction (5a7c8d5)
  • temp disable fault centre from project file (44d813d)

Documentation

  • 📝 updating docs for pydata, actually committing changes (be33a6f)
  • 📝 updating documentation to use pydata theme (c5b28d5)
  • adding fault network example (2bcbfac)
  • adding more to design document (8322c60)

1.4.6 (2022-04-26)

Bug Fixes

  • 🚑 quick fix for projectfile import error (34fb1d6)
  • 🚑 try 2, catching loopimporterror as well as import error (5db6a81)

1.4.5 (2022-04-14)

Bug Fixes

  • 🎨 adding LoopProjectFileProcessor to modeling init (fa1c8f7)
  • 🐛 adding origin and maximum to the data processor (bb7b811)
  • 🐛 adding scaling to splay faults to reduce bubbles (7d618fe)
  • 🐛 can add faults even when stratigraphic column hasn't been set (33366f9)
  • 🐛 fault geometry weren't being set if they were calculated from the fault trace (ddec5cb)
  • 🐛 fixing warning message with divide by 0 (ebd12ff)
  • bug with fold constraints causing crash (3abb65e)
  • bug with fold interpolator (8d94ca4)
  • temp disable splay fault (721270e)

1.4.4 (2022-03-21)

Bug Fixes

  • 🚑 import failing when surfepy not install (5041ad6)
  • 🚑 number of steps was actually number of cells causing issues with indexing (88b8fee)
  • 🚑 surfe import was failing (63d61a4)
  • 🐛 fixed bug with fault clipping, uses normal direction to infer hanging wall side away from interpolated surfaces (7ea9beb)
  • 🐛 small fixes for making sure model update is called when params are changed (a22ed61)
  • 🐛 stratigraphic column was not covering scalar field range. (990e0f4)
  • 🐛 weight for p2 interpolator wasn't being applied (5002a8a)
  • 🔥 changes fault slip warning to info (16d16d7)
  • 🚨 fixig pylint error (d5c99cd)
  • ✨ adding config class for storing module wide configs (9407ff7)
  • ✨ faults/fault builder now store the fault geometry parameters (f92749b)
  • ✨ flagging interpolator not up to date when data changes (96c8ddb)
  • ✨ intrusionbuilder-->intrusionframebuilder, intrusionbuilder will build intrusionfeature (7d5935c)
  • adding debugging code for indexing structured grid (59e130a)
  • adding intrusion dependencies to setup.py (08f6a22)
  • adding logger and remove unused files (bd3f428)
  • change logs (b8000db)
  • change pandas append to concat (51bbf5e)
  • changing ckmeans to sklearn kmeans (60f3ec5)
  • fixing import warnings (3b5c0f3)
  • improvements in modified scalar field (d1de75d)
  • Intrusion Builder class (f697ee6)
  • intrusion feature containing pre IBody fxs (cd6fe61)
  • merge origin/intrusion to local intrusion (2507b33)
  • moving config to own file (3dc2a19)
  • remove of ckwrap library (e5ddf5e)
  • temp removing rotate from structured support (2e2d1c6)
  • unit tests for intrusions (85b9b4b)
  • update of builder (cdf7ebb)
  • update of conceptual models (948beef)
  • update of intrusion module (bba0163)
  • update skfmm import (ea855f0)
  • variogram parameters now in set_sgs_parameters (26ca7b3)

Performance Improvements

  • ⚡ reducing memory for unstructured tetra (1ee5dd6)

1.4.3 (2022-02-21)

Bug Fixes

  • 🚑 added scale parameter for calculate_topo matrix. (839e0e0)
  • 🐛 adding experimental flag for loopstructural (f810479)
  • 🐛 changes support barycentre to property (d2e1f0b)
  • 🐛 fixing bugs for flake8 (9dce30c)
  • 🐛 small changes to pass tests. (14c7580)
  • ⚡ changing aabb to sparse matrix (2cbdab7)
  • adding isnan to inequality check (d780300)
  • adding node inequality constraints (de33914)
  • adding option to use mkl (22883ba)
  • adding p2 interpolator for 3d :) (5d0acfb)
  • bug with equality constraints (b192cff)
  • changing base unstructred support to work (50ca16b)
  • correct ordering of shape functions (6f2f113)
  • minor fix to variogram saving wavelength guess as attribute (2dbc29e)
  • modifying for 3d/generic case. (c6a8ea3)
  • norm constraints p2 (93d3165)
  • region funct type incorrect causing (a5d27f1)
  • storing constraints as numpy array (6c75379)

Documentation

  • 📝 adding warning that analysis module is experimental (0574e57)
  • 📝 updating documentation for evaluate model (1dcc716)

1.4.2 (2022-02-07)

Bug Fixes

  • actually fixing divide by zero (ef4d7d0)
  • added function for plotting structural frames (69dbc6d)
  • adding mpl syntax for 3d view points (cc7788f)
  • bug where data is not float (e6f7e1f)
  • bug with calculating average fault ori (a2099cd)
  • commenting out osqp (c2fd2da)
  • crashing when all constraints of a type outside of box (7907f58)
  • extra checks (ba6f391)
  • fault interpolation taking a long time (78fa916)
  • faults interpolation mesh was not being adjusted (33722f6)
  • faults not rescaling when incorrect norm vectors used (9706f25)
  • faults not visible in model (32cbb2a)
  • faults with no value data not interpolating (bf55ec6)
  • interpolator type is now an enum (8197552)
  • norm constraint out of model cause crash (20692e2)
  • number of constraints warning message (9abcc04)
  • removed divide by 0 error (9f17489)
  • updating logging (f77f915)

1.4.1 (2021-12-06)

Bug Fixes

  • updating github workflow (84b4017)
  • updating version number manually (1f11571)

1.4.0 (2021-12-06)

Features

1.3.12 (2021-12-05)

Bug Fixes

  • adding polarity to LS datastructure (61842f0)
  • error creating mesh for faults (7efe910)
  • gradient norm used for folds when fold (36f9cff)
  • splot not working for overturned folds (2e185b5)

1.3.11 (2021-11-29)

Bug Fixes

  • added fault stratigraphy relation to processor (ac864d8)
  • added project file processor (855a690)
  • bugfix crash when evaluating feature (d24f656)
  • fault support resized for all faults (63ea5ec)
  • formatting (a2f4fee)
  • formatting (06d7e32)
  • missing argument from test + typo (dee158a)
  • multiple faults not applied to stratigraphy data (d7f4689)
  • only host version built on action (8c7d058)
  • typo in variable names, AAT instead of ATA (6a1a98f)
  • updating github ci for conda build (3525ec1)

1.3.10 (2021-11-10)

Bug Fixes

  • conda build for all python (04757b5)

Documentation

  • fixing documentation autobuild (54e0bc9)

1.3.9 (2021-11-10)

Bug Fixes

  • added points argument to faultframe builder (4588d3c)
  • bugfix thickness=False not working for processor (45e3f8f)
  • fault frame build using scaled vector (87bc4e2)
  • fdi bug was weigthing grad by volume (7cd6296)
  • passing verb argument to pyamg solve (52c277d)
  • reducing default fault buffer from .4 to .2 (328013e)
  • removing _ from pli constraint names (08473c3)
  • typos (c67fc54)
  • updating docker image (ff2becd)
  • weight can be float or int (d2c469f)

Documentation

  • updating docs to use releaseplease changelog (cbc8690)

1.3.8 (2021-11-08)

Bug Fixes

  • adding cython code for getting neighbour pairs (65a0a44)
  • adding origin to scalar field (8bfeb54)
  • bugfix for pli weighting (1ce7380)
  • faults are more generic (4fc4627)
  • fold builder was adding data twice (770e666)
  • fold rotation angle calculated incorrectly (aea51bf)
  • generalising support functions for grid and tetra (761fd03)
  • gradient constraints in pli weighted by vol (9b487fd)
  • kwargs weren't being passed to fold builder (d5135c5)
  • matrix assembly based on constraints dict (20407e4)
  • need to put exception type to get message (16c01ea)
  • nonlinear will replace discrete class (86816d1)
  • normalise rows of interpolation matrix (ae315d2)
  • normalise vector for cg (f8cf221)
  • plot vector field crashing (e35f6b2)
  • pytest failed (9136c99)
  • removing sign change for rotation angle (7ab33fd)
  • speed up (e5b53d8)
  • speeding up interface constraints (3f4a845)
  • weighting fdi using volume of element (665e4fe)

Documentation

  • adding debugging guide (540b5ac)
  • updating to issue form, using scipy for a template (70b3a67)

1.3.7 (2021-10-13)

Bug Fixes

  • abutting fault polarity was being calculated inconsistently. (c77681f)
  • adding folded fold frame creates a fold frame not structural frame (36aa4b3)
  • call to update feature when initialising rotation angle plotter (b97f017)
  • setting default for viewer to model = none (8aec0e4)
  • support box is now rescaled for plot (6723790)

1.3.6 (2021-10-12)

Bug Fixes

  • removing invalid classifiers (5d8de87)

1.3.5 (2021-10-11)

Bug Fixes

  • adding aabb (512f0a3)
  • adding gradient option for m2l wrapper (cdce6e8)
  • adding option to define custom mesh builder for pli (b21fa8c)
  • changed to boolean logic for aabb (f5a5f9b)
  • cleaning up (262a89d)
  • incorrect indexing for FDI grad constraints (d6b8280)
  • move cg call to interpolator (53492a2)
  • moved generic methods to base class (23ec788)
  • names kwarg wasn't used for multiple slices (daebcf0)
  • pli grad constraint weights were divided by 3 (cedcffb)
  • removing old lavavu wrapper, name wasn't (9226f40)
  • renaming mesh to support for PLI (2d07317)
  • setup.py codec and filename error (479ae2b)
  • unstructured mesh seems to work (3bd5e24)
  • updating setup.py to include metadata for pypi (fea4317)

1.3.4 (2021-10-05)

Bug Fixes

  • adding loop specific exceptions and project file (a7664d2)
  • adding non-linear constraint template (03b9e73)
  • adding non-linear constraint template (1be8a45)
  • boolean operator in surfe wrapper (f11816e)
  • bugfix for gradient constraints (5fbbb08)
  • constant fold axis was referencing fold_frame (2050b68)
  • intersection visualisation was using the (1cf531b)
  • method names for FDI/PLI are consistent (aebba23)
  • structural frame weights were being overwritten by (15e7f23)

1.3.3 (2021-09-29)

Bug Fixes

  • kernel parameter for surfe wasn't being applied (4e99bbf)

1.3.2 (2021-09-28)

Bug Fixes

  • adding missing functions to lavavu wrapper (8a7b92c)
  • adding tangents to surfepy wrapper (1c0917e)

1.3.1 (2021-09-28)

Bug Fixes

  • updating workflows to run on edited (5b051f4)

1.3.0 (2021-09-27)

Features

  • updating viewer to use base class (7c314a0)

Bug Fixes

  • adding base plotting class for easy inheritance (1a9614d)
  • adding builders for fold and folded frame (a6b61fb)
  • adding callback function to builder update (1eca6f5)
  • adding callback to model.update (1fe5fad)
  • adding callbackfunction to isosurface (038df51)
  • adding check to see if a feature is valid. (c9bd3b0)
  • adding exception if fold frame hasn't (59a9d66)
  • adding exception when modelling faults with surfe (15806d7)
  • adding function to generate cmap and range for (6354712)
  • adding lavavu subclass (b3c042f)
  • adding loop exception for interpolator (f43a583)
  • adding set item for fold frame to change (7d975bd)
  • adding vtk export (7e7d63a)
  • changing structural frames to have a setup (d6fcdea)
  • checking type for vector plotter + adding name (19c7d5e)
  • cmap not being passed for add_isosurface (491fb34)
  • creating specific builder for folded foliations (b40ba9a)
  • end of day fold frame (6c49981)
  • error to catch when not enough data (bdd93ea)
  • import vtk exception (01005b3)
  • process data doesn't allow bad formatted (b9f8364)
  • removing function to calculate intersection, (9080877)
  • removing kwargs that have value of None (ce05b5f)
  • removing normalisation from (3216d07)
  • removing specific builder for folded fold frame (9eed793)
  • sections can be painted with a feature (905eeb1)
  • transitioning fold frame building into (7d12b3b)
  • typo in parameter (917711a)

1.2.4 (2021-09-07)

Bug Fixes

  • changing ci to run on published (7c043f0)
  • pip publish run on release published (bbc0e38)

1.2.3 (2021-09-07)

Bug Fixes

  • 💚 axis label missing from PLI mesh (d52ad3f)
  • adding release-please action (be808dd)
  • changing branch for release-please to master (f0ce0d4)
  • changing version inclusion (6efca29)