From e0d741783e59a9d6268c32b184c508efb38a4ff2 Mon Sep 17 00:00:00 2001 From: rxu17 <26471741+rxu17@users.noreply.github.com> Date: Wed, 24 Jan 2024 15:43:04 -0800 Subject: [PATCH] lint --- genie/database_to_staging.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/genie/database_to_staging.py b/genie/database_to_staging.py index 0b76b6b6..3520eb97 100644 --- a/genie/database_to_staging.py +++ b/genie/database_to_staging.py @@ -99,7 +99,7 @@ "n_depth": "float", "t_depth": "float", "mutationInCis_Flag": "boolean", - "Annotation_Status": "string" + "Annotation_Status": "string", } @@ -840,12 +840,13 @@ def store_maf_files( configured_mafdf = configure_maf( mafchunk, remove_mafinbed_variants, flagged_mutationInCis_variants ) - configured_mafdf = configured_mafdf[list(FULL_MAF_RELEASE_SCHEMA.keys())] + configured_mafdf = configured_mafdf[ + list(FULL_MAF_RELEASE_SCHEMA.keys()) + ] # Create maf for release merged_mafdf = remove_maf_samples( configured_mafdf, keep_for_merged_consortium_samples ) - append_or_create_release_maf(merged_mafdf, mutations_path) # Create maf for center staging center_mafdf = remove_maf_samples(