From 52a770387b1babe3ea4d0ae338363666c319faf8 Mon Sep 17 00:00:00 2001 From: danlu1 Date: Tue, 23 Apr 2024 03:15:31 +0000 Subject: [PATCH] return index for rows with incorrect YEAR_DEATH info --- genie_registry/clinical.py | 1 + 1 file changed, 1 insertion(+) diff --git a/genie_registry/clinical.py b/genie_registry/clinical.py index 80b68c90..e6ba0ff0 100644 --- a/genie_registry/clinical.py +++ b/genie_registry/clinical.py @@ -196,6 +196,7 @@ def _check_year_death_validity(clinicaldf: pd.DataFrame) -> str: "N/A", temp["YEAR_DEATH"] >= temp["YEAR_CONTACT"], ) + index = [",".join(str(idx)) for idx, i in enumerate(check_result) if i == "False"] if "False" in check_result: error = "Patient Clinical File: Please double check your YEAR_DEATH and YEAR_CONTACT columns. YEAR_DEATH must be >= YEAR_CONTACT.\n" return error