From 00f527e5628040418b345f65f9cb3976e366564c Mon Sep 17 00:00:00 2001
From: rxu17 <26471741+rxu17@users.noreply.github.com>
Date: Sun, 7 Jan 2024 18:28:34 -0800
Subject: [PATCH] use newer version of annotator.jar

---
 genie/process_mutation.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/genie/process_mutation.py b/genie/process_mutation.py
index f4aa334d..d6d31d29 100644
--- a/genie/process_mutation.py
+++ b/genie/process_mutation.py
@@ -202,12 +202,14 @@ def process_mutation_workflow(
         "syn22053204",
         ifcollision="overwrite.local",
         downloadLocation=genie_config["genie_annotation_pkg"],
+        version=1, #TODO: This should pull from a config file in the future
     )
     # Genome Nexus Jar file
     syn.get(
         "syn22084320",
         ifcollision="overwrite.local",
         downloadLocation=genie_config["genie_annotation_pkg"],
+        version=13, #TODO: This should pull from a config file in the future
     )
 
     annotated_maf_path = annotate_mutation(