Version 1.3.0

What's Changed

• [ORCA-136] Add rudimental PHI detection by doing a grep by @adamjtaylor/@thomasyu888 in #22, #26
• [IBCDPE-558] Add qc-file CLI command for performing single-file QC by @BrunoGrandePhD in #27
• [ORCA-188] Adds support for BAM file type by @BWMac in #28
• [ORCA-189] Adds support for FASTQ and FASTQ-GZ files by @BWMac in #29

New Contributors

• @adamjtaylor made their first contribution in #22
• @thomasyu888 made their first contribution in #26

Full Changelog: v1.2.0...v1.3.0

Version 1.2.0

What's Changed

• [ORCA-82] Support TSV files for py-dcqc by @BWMac in #23
• [ORCA-179] Interpret the absence of CLI values for list options as None instead of empty list by @BrunoGrandePhD in #24
• [ORCA-167] Stage files lazily by @BrunoGrandePhD in #25

New Contributors

• @BWMac made their first contribution in #23

Full Changelog: v1.1.0...v1.2.0

Version 1.1.0

What's Changed

• Switch to fs-synapse package by @BrunoGrandePhD in #13
• Fix docker build script by @BrunoGrandePhD in #14
• Speed up py-dcqc test suite by @BrunoGrandePhD in #16
• Revamp the way that local paths are handled by the File class by @BrunoGrandePhD in #17
• Close code coverage gaps with main, target, and mixins by @BrunoGrandePhD in #18
• Close code coverage for suites and tests submodules by @BrunoGrandePhD in #19
• Close code coverage for parsers and reports submodules by @BrunoGrandePhD in #20
• Copy image to Quay.io to Docker Hub rate limits by @BrunoGrandePhD in #21

Full Changelog: v1.0.0...v1.1.0

Version 1.0.0

v1.0.0

Remove unnecessary quotes

Version 0.3.0

v0.3.0

Fix Linux installation issue with Dockerfile

Version 0.2.0

v0.2.0

Merge pull request #6 from Sage-Bionetworks-Workflows/bgrande/ORCA-90…

Version 0.1.0

Merge pull request #3 from Sage-Bionetworks-Workflows/bgrande/synapsefs

Implement `SynapseFS`, a file system-like abstraction for file operations