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A Python tool to download and parse GenBank files

GitHub release (latest by date) GitHub license Contributor Covenant DOI

Installation

  1. Fork git repo into local machine (click on fork) and clone, or simply clone main branch with
git clone https://github.com/Robaina/GenBankpy.git
  1. CD to project directory and set conda environment if not already set:
conda env create -n genbankpy -f environment.yml
  1. Activate environment:
conda activate genbankpy

Usage

You can find a jupyter notebook with usage examples here.

Citation

If you use this software, please cite it as below:

Robaina-Estévez, S. (2022). Genbankpy: a Python tool to ddownload and parse GenBank files (Version 0.0.1)[Computer software]. https://doi.org/10.5281/zenodo.7046036.