From 97b7a3c46a0fc7a9651d51c730b55d5a81275bbb Mon Sep 17 00:00:00 2001 From: Paul Wighton Date: Thu, 4 Aug 2022 13:48:19 -0400 Subject: [PATCH] [FIX] fix for issue #449 (#462) --- neurodocker/templates/freesurfer.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/neurodocker/templates/freesurfer.yaml b/neurodocker/templates/freesurfer.yaml index e7e15a9b..bdd32442 100644 --- a/neurodocker/templates/freesurfer.yaml +++ b/neurodocker/templates/freesurfer.yaml @@ -56,7 +56,7 @@ binaries: # From https://github.com/freesurfer/freesurfer/blob/54018f7d6f620d6288b28f50e14a0a4ba421757c/Dockerfile#L20-L42 # freesurfer env OS: "Linux" - PATH: "{{ self.install_path }}/bin:{{ self.install_path }}/fsfast/bin:{{ self.install_path }}/tktools:{{ self.install_path }}/mni/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin" + PATH: "{{ self.install_path }}/bin:{{ self.install_path }}/fsfast/bin:{{ self.install_path }}/tktools:{{ self.install_path }}/mni/bin:$PATH" FREESURFER_HOME: "{{ self.install_path }}" FREESURFER: "{{ self.install_path }}" SUBJECTS_DIR: "{{ self.install_path }}/subjects"