From 25fc96b787db54bf0bd127aeb923c6b90917297f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ricardo=20Hern=C3=A1ndez=20Medina?= Date: Tue, 4 Jun 2024 14:46:04 +0200 Subject: [PATCH] :wrench: Add default KS config --- .../conf/task/identify_associations_ks.yaml | 26 +++++++++++++++++++ .../task/random_continuous__id_assoc_ks.yaml | 13 ---------- 2 files changed, 26 insertions(+), 13 deletions(-) create mode 100644 src/move/conf/task/identify_associations_ks.yaml diff --git a/src/move/conf/task/identify_associations_ks.yaml b/src/move/conf/task/identify_associations_ks.yaml new file mode 100644 index 00000000..3c2e23af --- /dev/null +++ b/src/move/conf/task/identify_associations_ks.yaml @@ -0,0 +1,26 @@ +defaults: + - identify_associations_ks_schema + +model: + categorical_weights: ${weights:${data.categorical_inputs}} + continuous_weights: ${weights:${data.continuous_inputs}} + num_hidden: + - 100 + num_latent: 50 + beta: 0.1 + dropout: 0.1 + cuda: false + +training_loop: + lr: 1e-4 + num_epochs: 200 + batch_dilation_steps: + - 50 + - 100 + - 150 + kld_warmup_steps: + - 15 + - 20 + - 25 + early_stopping: false + patience: 0 diff --git a/tutorial/config/task/random_continuous__id_assoc_ks.yaml b/tutorial/config/task/random_continuous__id_assoc_ks.yaml index 1eb1b3e5..f825c7b6 100644 --- a/tutorial/config/task/random_continuous__id_assoc_ks.yaml +++ b/tutorial/config/task/random_continuous__id_assoc_ks.yaml @@ -11,28 +11,15 @@ target_value: plus_std save_refits: True model: - categorical_weights: ${weights:${data.categorical_inputs}} - continuous_weights: ${weights:${data.continuous_inputs}} num_hidden: - 100 num_latent: 50 beta: 0.1 dropout: 0.1 - cuda: false training_loop: lr: 1e-4 num_epochs: 200 - batch_dilation_steps: - - 50 - - 100 - - 150 - kld_warmup_steps: - - 15 - - 20 - - 25 - early_stopping: false - patience: 0 perturbed_feature_names: - proteomics_3