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Spatial Cell Type Code:

These are the code files used to construct the results and figures for the manuscript: "Spatial Cell Type Enrichment Predicts Mouse Brain Connectivity" by Shenguan Sun and Justin Torok, et al.

Description of the Data and file structure

Here we detail the contents of each of the code files used here.

  • FIBoxplot.m: Function for constructing box plots
  • Fig2.ipynb: Notebook for generating Figure 2 results
  • Fig3.ipynb: Notebook for generating Figure 3 results
  • Fig4.ipynb: Notebook for generating Figure 4 results
  • Fig5.ipynb: Notebook for generating Figure 5 results
  • Fig6.ipynb: Notebook for generating Figure 6 results
  • FISuperclass.m: Function for parsing feature importance results from individual cell types into superclasses
  • zeiselfeatureimp.m: General script for generating various figures and results

Sharing/access Information

See the following Dryad DOI for the dependencies required: 10.5061/dryad.t76hdr866