pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>readbiomed-conceptmapper</groupId>
	<artifactId>readbiomed-conceptmapper</artifactId>
	<version>0.0.1-SNAPSHOT</version>
	<build>
		<sourceDirectory>src</sourceDirectory>
		<plugins>
			<plugin>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>3.8.1</version>
				<configuration>
					<source>1.7</source>
					<target>1.7</target>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.uima</groupId>
				<artifactId>jcasgen-maven-plugin</artifactId>
				<version>2.5.0</version> <!-- change this to the latest version -->
				<executions>
					<execution>
						<goals>
							<goal>generate</goal>
						</goals>
						<configuration>
							<typeSystemIncludes>
								<typeSystemInclude>src/main/resources/readbiomed/document/TypeSystem.xml</typeSystemInclude>
								<typeSystemInclude>src/main/resources/readbiomed/annotators/dictionary/utils/ConceptMapperTypes.xml</typeSystemInclude>
							</typeSystemIncludes>
							<typeSystemExcludes></typeSystemExcludes>
							<limitToProject>false</limitToProject>
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>build-helper-maven-plugin</artifactId>
				<version>1.8</version>
				<executions>
					<execution>
						<id>add-source</id>
						<phase>generate-sources</phase>
						<goals>
							<goal>add-source</goal>
						</goals>
						<configuration>
							<sources>
								<source>${project.build.directory}/generated-sources/java/</source>
							</sources>
						</configuration>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
	<repositories>
		<repository>
			<id>bionlp-sourceforge</id>
			<url>http://svn.code.sf.net/p/bionlp/code/repo/</url>
		</repository>
	</repositories>
	<dependencies>
		<dependency>
			<groupId>org.apache.uima</groupId>
			<artifactId>uimafit-core</artifactId>
			<version>2.2.0</version>
		</dependency>
		<dependency>
			<groupId>org.apache.uima</groupId>
			<artifactId>ConceptMapper</artifactId>
			<version>2.10.2</version>
			<exclusions>
				<exclusion>
					<groupId>xml-apis</groupId>
					<artifactId>xml-apis</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>edu.ucdenver.ccp</groupId>
			<artifactId>nlp-pipelines-conceptmapper</artifactId>
			<version>0.5.4</version>
			<exclusions>
				<exclusion>
					<groupId>stax</groupId>
					<artifactId>stax-api</artifactId>
				</exclusion>
			</exclusions>
		</dependency>

	</dependencies>
</project>