From f5c7747afb37e9c62766ad8c5671f00b159a2efb Mon Sep 17 00:00:00 2001 From: Paul Kent Date: Wed, 10 Oct 2018 19:58:16 -0400 Subject: [PATCH] Correct spelling errors across entire source --- CMake/ClangCompilers.cmake | 2 +- CMake/FindMKL.cmake | 4 +-- CMake/GNUCompilers.cmake | 2 +- CMake/ctest_script.cmake | 4 +-- CMakeLists.txt | 4 +-- README.md | 8 +++--- doxygen/Doxyfile | 2 +- doxygen/Doxyfile.ug | 2 +- doxygen/OrbitalOptimization.tex | 2 +- doxygen/dev/basic.dox | 2 +- doxygen/dev/index.dox | 2 +- doxygen/qmcpack.cfg | 2 +- labs/lab1_qmc_statistics/fulltree.sh | 2 +- manual/afqmc.tex | 2 +- manual/convert4qmc.tex | 6 ++-- manual/features.tex | 2 +- manual/gaussian_orbitals_solids.tex | 2 +- manual/hamiltonianobservable.tex | 4 +-- manual/integrals_for_afqmc.tex | 4 +-- manual/lab_condensed_matter.tex | 14 +++++----- manual/lab_qmc_basics.tex | 6 ++-- manual/qmcpack_manual.sty | 2 +- manual/running.tex | 2 +- manual/selected_ci.tex | 4 +-- manual/spo_heg.tex | 2 +- manual/spo_hybrid.tex | 2 +- .../user_guide_source/nexus_user_guide.tex | 8 +++--- nexus/executables/ntest | 2 +- nexus/executables/produce | 4 +-- nexus/executables/qfit | 2 +- nexus/executables/qmca | 6 ++-- nexus/library/gamess.py | 2 +- nexus/library/gamess_input.py | 2 +- nexus/library/generic.py | 2 +- nexus/library/numerics.py | 4 +-- nexus/library/qmcpack_input.py | 2 +- nexus/library/sqd_input.py | 2 +- nexus/library/structure.py | 4 +-- nexus/library/unit_converter.py | 2 +- schema/qmcpack.xsd | 2 +- schema/qmcpack_full.xsd | 2 +- schema/qmcplusplus.xsd | 2 +- src/AFQMC/Drivers/AFQMCDriver.cpp | 4 +-- src/AFQMC/Drivers/VMCDriver.cpp | 2 +- src/AFQMC/Drivers/selectedCI.cpp | 18 ++++++------ src/AFQMC/Estimators/SlaterDetOperations.h | 4 +-- .../Hamiltonians/SparseGeneralHamiltonian.cpp | 8 +++--- .../phaseless_ImpSamp_ForceBias.cpp | 4 +-- src/AFQMC/Utilities/taskgroup.h | 2 +- .../MultiPureSingleDeterminant.cpp | 28 +++++++++---------- .../Wavefunctions/PureSingleDeterminant.cpp | 2 +- src/CMakeLists.txt | 4 +-- src/Estimators/TraceManager.h | 2 +- src/Estimators/accumulators.h | 2 +- src/Lattice/CrystalLattice.h | 2 +- src/Lattice/MakeCrystalLattice.h | 2 +- src/Lattice/ParticleBConds.h | 10 +++---- src/Lattice/Uniform2DGridLayout.h | 2 +- src/Lattice/Uniform3DGridLayout.h | 2 +- src/LongRange/EwaldHandler.h | 4 +-- src/LongRange/KContainer.cpp | 2 +- src/LongRange/LPQHISRCoulombBasis.h | 2 +- src/LongRange/StructFact.cpp | 4 +-- src/LongRange/TwoDEwaldHandler.h | 4 +-- src/Numerics/Bessel.h | 2 +- src/Numerics/OneDimCubicSpline.h | 6 ++-- src/Numerics/OneDimGridBase.h | 2 +- src/Numerics/OneDimGridFunctor.h | 2 +- src/Numerics/OptimizableFunctorBase.h | 2 +- src/OOMPI/Request.h | 2 +- src/OOMPI/User_type.h | 2 +- src/OhmmsData/OhmmsParameter.h | 4 +-- src/OhmmsData/RecordProperty.h | 2 +- src/OhmmsPETE/OhmmsTinyMeta.h | 2 +- src/OhmmsSoA/TensorSoaContainer.h | 2 +- src/OhmmsSoA/VectorSoaContainer.h | 2 +- src/Optimize/VariableSet.h | 6 ++-- src/PETE/Scalar.h | 2 +- src/Particle/AdiosWalkerInput.cpp | 12 ++++---- src/Particle/HDFWalkerOutput.cpp | 2 +- src/Particle/ParticleSet.h | 2 +- .../LMYE_QMCCostFunctionOMP.cpp | 2 +- src/QMCDrivers/QMCCostFunctionCUDA.cpp | 2 +- .../QMCFixedSampleLinearOptimize.cpp | 4 +-- src/QMCDrivers/QMCUpdateBase.h | 2 +- src/QMCDrivers/RMC/RMCSingleOMP.cpp | 2 +- src/QMCHamiltonians/HamiltonianFactory.cpp | 2 +- src/QMCHamiltonians/MPC.cpp | 2 +- src/QMCHamiltonians/PulayForce.cpp | 2 +- src/QMCTools/GamesAsciiParser.cpp | 2 +- src/QMCTools/GaussianFCHKParser.cpp | 4 +-- src/QMCTools/PyscfToQmcpack.py | 2 +- src/QMCTools/ppconvert/src/CubicSpline.h | 2 +- src/QMCTools/ppconvert/src/NLPPClass.cc | 2 +- .../ppconvert/src/common/CubicSplineCommon.h | 2 +- .../ppconvert/src/common/GKIntegration.h | 4 +-- src/QMCTools/ppconvert/src/common/IOVarBase.h | 2 +- .../ppconvert/src/common/OptimizedBreakup.h | 6 ++-- .../BsplineFactory/SplineR2RAdoptor.h | 2 +- .../EinsplineSetBuilderESHDF.fft.cpp | 4 +-- .../EinsplineSetBuilder_createSPOs.cpp | 4 +-- src/QMCWaveFunctions/FDLRWfn.cpp | 2 +- .../Fermion/BackflowTransformation.h | 2 +- src/QMCWaveFunctions/Fermion/SlaterDetOpt.cpp | 8 +++--- src/QMCWaveFunctions/Jastrow/BsplineFunctor.h | 2 +- src/QMCWaveFunctions/Jastrow/J1OrbitalSoA.h | 4 +-- .../Jastrow/PolynomialFunctor3D.h | 2 +- src/QMCWaveFunctions/Jastrow/SplineFunctors.h | 12 ++++---- .../Jastrow/kSpaceJastrow.cpp | 2 +- .../MolecularOrbitals/LCOrbitalSetOpt.h | 10 +++---- .../MolecularOrbitals/SphericalBasisSet.h | 4 +-- src/QMCWaveFunctions/lcao/SoaAtomicBasisSet.h | 2 +- src/einspline/bspline_eval_d.h | 6 ++-- src/einspline/bspline_eval_d_std.cpp | 6 ++-- src/einspline/multi_bspline_eval_d.h | 6 ++-- src/einspline/multi_bspline_eval_d_std3.cpp | 6 ++-- src/einspline/multi_bspline_eval_s.h | 6 ++-- src/einspline/multi_bspline_eval_s_std3.cpp | 6 ++-- src/einspline/multi_bspline_eval_z.h | 6 ++-- src/einspline/multi_bspline_eval_z_std3.cpp | 6 ++-- src/einspline/multi_nubspline_eval_z.h | 6 ++-- src/einspline/multi_nubspline_eval_z_std.cpp | 6 ++-- src/einspline/nubspline_eval_d.h | 6 ++-- src/einspline/nubspline_eval_d_std.cpp | 6 ++-- src/formic/utils/archive.h | 4 +-- src/formic/utils/lmyengine/block_alg.cpp | 6 ++-- src/formic/utils/lmyengine/block_alg.h | 2 +- src/formic/utils/lmyengine/block_detail.cpp | 4 +-- src/formic/utils/lmyengine/block_mat.cpp | 2 +- src/formic/utils/lmyengine/block_mat.h | 2 +- src/formic/utils/lmyengine/eigen_solver.h | 2 +- src/formic/utils/lmyengine/energy_target.cpp | 6 ++-- .../utils/lmyengine/energy_target_accu.cpp | 2 +- .../utils/lmyengine/energy_target_accu.h | 2 +- src/formic/utils/lmyengine/eom.cpp | 2 +- src/formic/utils/lmyengine/matrix_builder.cpp | 4 +-- src/formic/utils/lmyengine/matrix_builder.h | 4 +-- src/formic/utils/matrix.h | 8 +++--- src/formic/utils/numeric.cpp | 8 +++--- src/formic/utils/reusable_array.h | 2 +- src/simd/inner_product.hpp | 2 +- src/spline2/bspline_traits.hpp | 2 +- tests/molecules/H2_ae/CMakeLists.txt | 2 +- tests/molecules/H4_ae/CMakeLists.txt | 2 +- tests/scripts/check_scalars.py | 2 +- tests/scripts/check_stats.py | 2 +- utils/TwistAvg.pl | 2 +- utils/setup-qmc.pl | 4 +-- 148 files changed, 280 insertions(+), 280 deletions(-) diff --git a/CMake/ClangCompilers.cmake b/CMake/ClangCompilers.cmake index 836751f556..098c890384 100644 --- a/CMake/ClangCompilers.cmake +++ b/CMake/ClangCompilers.cmake @@ -14,7 +14,7 @@ IF(QMC_OMP) SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fopenmp") ENDIF(QMC_OMP) -# Set clang specfic flags (which we always want) +# Set clang specific flags (which we always want) ADD_DEFINITIONS( -Drestrict=__restrict__ ) SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fomit-frame-pointer -fstrict-aliasing") diff --git a/CMake/FindMKL.cmake b/CMake/FindMKL.cmake index 34630f06b8..7a08b61734 100644 --- a/CMake/FindMKL.cmake +++ b/CMake/FindMKL.cmake @@ -1,9 +1,9 @@ -# Simple file to find MKL (if availible) +# Simple file to find MKL (if available) # This needs a lot of work to make it robust INCLUDE( CheckCXXSourceCompiles ) # Extremely Basic Support of common mkl module environment variables -# or -DMKLROOT/-DMKL_HOME instead of prefered -DMKL_ROOT +# or -DMKLROOT/-DMKL_HOME instead of preferred -DMKL_ROOT if (NOT MKL_ROOT) find_path(MKL_ROOT "mkl.h" HINTS ${MKLROOT} ${MKL_HOME} $ENV{MKLROOT} $ENV{MKL_ROOT} $ENV{MKL_HOME} diff --git a/CMake/GNUCompilers.cmake b/CMake/GNUCompilers.cmake index 8666bf366e..3f291a5e76 100755 --- a/CMake/GNUCompilers.cmake +++ b/CMake/GNUCompilers.cmake @@ -13,7 +13,7 @@ IF(QMC_OMP) SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fopenmp") ENDIF(QMC_OMP) -# Set gnu specfic flags (which we always want) +# Set gnu specific flags (which we always want) ADD_DEFINITIONS( -Drestrict=__restrict__ ) SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fomit-frame-pointer -finline-limit=1000 -fstrict-aliasing -funroll-all-loops") diff --git a/CMake/ctest_script.cmake b/CMake/ctest_script.cmake index da3d07c6bc..7fb36fa051 100644 --- a/CMake/ctest_script.cmake +++ b/CMake/ctest_script.cmake @@ -2,8 +2,8 @@ # Usage: ctest -s script,build # build = debug / optimized / valgrind / coverage # Note: this test will use use the number of processors defined in the variable N_PROCS, -# the enviornmental variables -# N_PROCS, or the number of processors availible (if not specified) +# the environmental variables +# N_PROCS, or the number of processors available (if not specified) # N_PROCS_BUILD, or N_PROCS (if not specified) # N_CONCURRENT_TESTS, or N_PROCS (if not specified) # TEST_SITE_NAME, or HOSTNAME (if not specified) diff --git a/CMakeLists.txt b/CMakeLists.txt index b93310bcbb..2b5fd3d3fa 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -179,11 +179,11 @@ SET(BUILD_UNIT_TESTS 1 CACHE BOOL "Build unit tests") SET(BUILD_SANDBOX 1 CACHE BOOL "Build sandbox tests and miniapps") SET(BUILD_LMYENGINE_INTERFACE 1 CACHE BOOL "Build LMY engine") IF (QMC_CUDA AND BUILD_LMYENGINE_INTERFACE) - MESSAGE(STATUS "LMY engine is not compatiable with CUDA build! Disabling LMY engine") + MESSAGE(STATUS "LMY engine is not compatible with CUDA build! Disabling LMY engine") SET(BUILD_LMYENGINE_INTERFACE 0) ENDIF() IF(MIXED_PRECISION AND BUILD_LMYENGINE_INTERFACE) - MESSAGE(STATUS "LMY engine is not compatiable with CPU mixed precision build! Disabling LMY engine") + MESSAGE(STATUS "LMY engine is not compatible with CPU mixed precision build! Disabling LMY engine") SET(BUILD_LMYENGINE_INTERFACE 0) ENDIF() SET(BUILD_AFQMC 0 CACHE BOOL "Build with AFQMC") diff --git a/README.md b/README.md index 713d345393..642cec1ea5 100644 --- a/README.md +++ b/README.md @@ -65,9 +65,9 @@ make -j 8 ## Set the environment - A number of enviornmental variables affect the build. In particular + A number of environmental variables affect the build. In particular they can control the default paths for libraries, the default - compilers, etc. The list of enviornmental variables is given below: + compilers, etc. The list of environmental variables is given below: | Environment variable | Description | |----------------------|-------------| @@ -81,10 +81,10 @@ make -j 8 ## CMake options - In addition to reading the enviornmental variables, CMake provides a + In addition to reading the environmental variables, CMake provides a number of optional variables that can be set to control the build and configure steps. When passed to CMake, these variables will take - precident over the enviornmental and default variables. To set them + precident over the environmental and default variables. To set them add -D FLAG=VALUE to the configure line between the cmake command and the path to the source directory. diff --git a/doxygen/Doxyfile b/doxygen/Doxyfile index 668cfe243d..e7e41f415a 100644 --- a/doxygen/Doxyfile +++ b/doxygen/Doxyfile @@ -1832,7 +1832,7 @@ UML_LOOK = NO # the class node. If there are many fields or methods and many nodes the # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS # threshold limits the number of items for each type to make the size more -# managable. Set this to 0 for no limit. Note that the threshold may be +# manageable. Set this to 0 for no limit. Note that the threshold may be # exceeded by 50% before the limit is enforced. UML_LIMIT_NUM_FIELDS = 10 diff --git a/doxygen/Doxyfile.ug b/doxygen/Doxyfile.ug index 73064a6697..a89cdb7fce 100644 --- a/doxygen/Doxyfile.ug +++ b/doxygen/Doxyfile.ug @@ -1747,7 +1747,7 @@ UML_LOOK = NO # the class node. If there are many fields or methods and many nodes the # graph may become too big to be useful. The UML_LIMIT_NUM_FIELDS # threshold limits the number of items for each type to make the size more -# managable. Set this to 0 for no limit. Note that the threshold may be +# manageable. Set this to 0 for no limit. Note that the threshold may be # exceeded by 50% before the limit is enforced. UML_LIMIT_NUM_FIELDS = 10 diff --git a/doxygen/OrbitalOptimization.tex b/doxygen/OrbitalOptimization.tex index a19959806e..7cbf649259 100644 --- a/doxygen/OrbitalOptimization.tex +++ b/doxygen/OrbitalOptimization.tex @@ -11,7 +11,7 @@ \newcommand{\Aopt}{\tilde{A}} \section{Trial wave functions in logarithmic form} -Let us consider a trial wave funciton, $\psi$, which is a product of +Let us consider a trial wave function, $\psi$, which is a product of components, \begin{equation} \psi = \psi_1 \psi_2 \psi_3 \dots diff --git a/doxygen/dev/basic.dox b/doxygen/dev/basic.dox index 91f7f3cbce..f7b8f0b0ac 100644 --- a/doxygen/dev/basic.dox +++ b/doxygen/dev/basic.dox @@ -66,7 +66,7 @@ Simply add new files to the INPUT list in \c ug.cfg or \c dev.cfg and run \c dox \code INPUT = ug/index.dox ug/gettingstarted.dox ug/somethingnew.dox \endcode -See an exmaple ug/qmc.dox. +See an example ug/qmc.dox.