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91a49761d9995c9973b7b9ee98e69275d730b1b1.json
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{
"id": "FragPipe (DIA-NN quant)_20241216_122000",
"software_name": "FragPipe (DIA-NN quant)",
"software_version": "22.0",
"search_engine_version": "",
"search_engine": "MSFragger",
"ident_fdr_psm": 0.01,
"ident_fdr_peptide": 0.01,
"ident_fdr_protein": 0.01,
"enable_match_between_runs": 0.0,
"precursor_mass_tolerance": "[-20 ppm, 20 ppm]",
"precursor_mass_tolerance_unit": null,
"fragment_mass_tolerance": "[-20 ppm, 20 ppm]",
"fragment_mass_tolerance_unit": null,
"enzyme": "Trypsin/P",
"allowed_miscleavages": 1,
"min_peptide_length": 6,
"max_peptide_length": 50,
"intermediate_hash": "91a49761d9995c9973b7b9ee98e69275d730b1b1",
"fixed_mods": "0.0,C-Term Peptide,true,-1; 0.0,N-Term Peptide,true,-1; 0.0,C-Term Protein,true,-1; 0.0,N-Term Protein,true,-1; 0.0,G (glycine),true,-1; 0.0,A (alanine),true,-1; 0.0,S (serine),true,-1; 0.0,P (proline),true,-1; 0.0,V (valine),true,-1; 0.0,T (threonine),true,-1; 57.02146,C (cysteine),true,-1; 0.0,L (leucine),true,-1; 0.0,I (isoleucine),true,-1; 0.0,N (asparagine),true,-1; 0.0,D (aspartic acid),true,-1; 0.0,Q (glutamine),true,-1; 0.0,K (lysine),true,-1; 0.0,E (glutamic acid),true,-1; 0.0,M (methionine),true,-1; 0.0,H (histidine),true,-1; 0.0,F (phenylalanine),true,-1; 0.0,R (arginine),true,-1; 0.0,Y (tyrosine),true,-1; 0.0,W (tryptophan),true,-1; 0.0,B ,true,-1; 0.0,J,true,-1; 0.0,O,true,-1; 0.0,U,true,-1; 0.0,X,true,-1; 0.0,Z,true,-1",
"variable_mods": "15.9949,M,true,1; 42.0106,[^,true,1; 79.96633,STY,false,3; -17.0265,nQnC,false,1; -18.0106,nE,false,1; 0.0,site_06,false,1; 0.0,site_07,false,1; 0.0,site_08,false,1; 0.0,site_09,false,1; 0.0,site_10,false,1; 0.0,site_11,false,1; 0.0,site_12,false,1; 0.0,site_13,false,1; 0.0,site_14,false,1; 0.0,site_15,false,1; 0.0,site_16,false,1",
"max_mods": 1,
"min_precursor_charge": 1.0,
"max_precursor_charge": 4.0,
"median_abs_epsilon": 0.168022345,
"nr_prec": 72356,
"is_temporary": false,
"old_new": "old",
"results": {
"6": {
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"mean_abs_epsilon": 0.4199068853,
"variance_epsilon": 0.7371036549,
"nr_prec": 52235,
"CV_median": 0.3223015592,
"CV_q90": 0.5242938484,
"CV_q75": 0.4064886216,
"CV_q95": 0.6168334084
},
"5": {
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"variance_epsilon": 1.0051737888,
"nr_prec": 58662,
"CV_median": 0.32486521,
"CV_q90": 0.5447986493,
"CV_q75": 0.414564787,
"CV_q95": 0.6478629364
},
"4": {
"median_abs_epsilon": 0.1646158215,
"mean_abs_epsilon": 0.595418156,
"variance_epsilon": 1.3156382329,
"nr_prec": 63957,
"CV_median": 0.3257411721,
"CV_q90": 0.5508345055,
"CV_q75": 0.4171043954,
"CV_q95": 0.6570489032
},
"3": {
"median_abs_epsilon": 0.168022345,
"mean_abs_epsilon": 0.6016213878,
"variance_epsilon": 1.3249664807,
"nr_prec": 72356,
"CV_median": 0.3277013349,
"CV_q90": 0.5540197213,
"CV_q75": 0.419777003,
"CV_q95": 0.6612703201
},
"2": {
"median_abs_epsilon": 0.1695574171,
"mean_abs_epsilon": 0.6036144058,
"variance_epsilon": 1.327367975,
"nr_prec": 73720,
"CV_median": 0.3277165207,
"CV_q90": 0.5557437984,
"CV_q75": 0.4202756372,
"CV_q95": 0.6634093849
},
"1": {
"median_abs_epsilon": 0.1695574171,
"mean_abs_epsilon": 0.6036144058,
"variance_epsilon": 1.327367975,
"nr_prec": 74186,
"CV_median": 0.3277165207,
"CV_q90": 0.5557437984,
"CV_q75": 0.4202756372,
"CV_q95": 0.6634093849
}
},
"weighted_sum": null,
"color": "#ff7f00",
"hover_text": "ProteoBench ID: FragPipe (DIA-NN quant)_20241216_122000<br>Software tool: FragPipe (DIA-NN quant) <br>Comment (private submission): ",
"scatter_size": 20.0,
"comments": "",
"proteobench_version": "0.5.8",
"scan_window": null,
"quantification_method_DIANN": null,
"second_pass": null,
"protein_inference": "ProteinProphet: --maxppmdiff 2000000 --minprob 0.5",
"predictors_library": null,
"submission_comments": "\n\nDataset URL: https://proteobench.cubimed.rub.de/datasets/91a49761d9995c9973b7b9ee98e69275d730b1b1/",
"quantification_method": "Robust LC (high accuracy)",
"mean_abs_epsilon": 0.6016213878,
"abundance_normalization_ions": null
}