Deploying on Cloud

[jordimassaguerpla]

Hi!

I would like to try Monai Deploy on Cloud to test some of the models in the Model Zoo.

I see I need to deploy several components: orthanc, monai deploy workflow manager, monai deploy informatics gateway, rabbit message queue, mongodb, ohif dicom viewer (do I miss anything?).

I've seen those helm charts in the deploy folder and also those setups for performance testing plus the demo .

However, it is a lot to digest.

Can you give me some hints/advice ? Can I deploy on any cloud or should I better do it on AWS EKS service? I read that only aws storage is supported, is this correct? Should I start with the deploy folder](https://github.com/Project-MONAI/monai-deploy-workflow-manager/tree/develop/deploy/helm) and then implement a helm chart for orthanc?

Thanks in advance and congratulations on this great project!!

[mocsharp]

Hi @jordimassaguerpla,

To run MONAI Deploy, you will need Workflow Manager, Informatics Gateway, MongoDB, RabbitMQ, and MinIO.

One option to test out all components is to use MONAI Deploy Express which includes a docker-compose file that brings up all required + optional components. This option allows you to deploy to any system and cloud provider quickly.

For helm chart deployment, I think @neildsouth, @woodheadio, or @nakfour may be able to help.

[neildsouth]

I would be able to help out with the helm stuff if you need argo. I have also checked the documentation here https://github.com/Project-MONAI/monai-deploy-workflow-manager/blob/develop/guidelines/mwm-developer-setup.md and it works as expected. cheers Neil

…

On Wed, 4 Jan 2023 at 16:04, Victor Chang ***@***.***> wrote: Hi @jordimassaguerpla <https://github.com/jordimassaguerpla>, To run MONAI Deploy, you will need Workflow Manager, Informatics Gateway, MongoDB, RabbitMQ, and MinIO. One option to test out all components is to use MONAI Deploy Express <https://github.com/Project-MONAI/monai-deploy/tree/main/deploy/monai-deploy-express> which includes a docker-compose file that brings up all required + optional components. This option allows you to deploy to any system and cloud provider quickly. For helm chart deployment, I think @neildsouth <https://github.com/neildsouth> or @woodheadio <https://github.com/woodheadio> may be able to help. — Reply to this email directly, view it on GitHub <#641 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AY7534DNBUZLZKRIJH6KQR3WQWNR5ANCNFSM6AAAAAATQUSBZ4> . You are receiving this because you were mentioned.Message ID: <Project-MONAI/monai-deploy-workflow-manager/repo-discussions/641/comments/4593228 @github.com>

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[dbericat]

I would totally try to use MONAI Deploy Express first if you just want to get started. https://github.com/Project-MONAI/monai-deploy/tree/main/deploy/monai-deploy-express

You have 2 options:

1. Take one of the 2 example MONAI Applications (MAPs) included within MONAI Deploy Express. Liver segmentation or Lung segmentation.
2. Take a model from Model Zoo, create an application (MAP) with MONAI Deploy App SDK (https://github.com/Project-MONAI/monai-deploy-app-sdk), and deploy it and run it on MONAI Deploy Express.

If you want to run them on Kubernetes for some reason, I would wait until @woodheadio releases the new Helm charts part of Workflow Manager 0.2 that is coming soon.

Any questions Jordi, please let us know! Adeu! :)

[jordimassaguerpla]

Hi @dbericat ! I want to try some example but I am getting very confused on which dcm to use with which argo and clinical workflows.

Can you point me to a specific example of a argo workflow with a clinical workflow with a dcm image? I was looking at the ones in monai deploy express but could not find the dcm images.

Gracies! :)

[jordimassaguerpla]

Sorry :) I am answering myself. There are links to some sample data at https://github.com/Project-MONAI/monai-deploy/tree/main/deploy/monai-deploy-express . I will use that :)

[dbericat]

Yes! use those! :)

[jordimassaguerpla]

Thanks @dbericat . See, this is what I am getting after all:

Is this what it is expected?

It would be great to know what the segmentation model is expected to produce with a specific example, to know I have not missed any parameter or configuration.

Thanks

jordi

[dbericat]

I don't think we included the output to compare results are the same, did we @mocsharp @JonnyHancox?