From f19f63aa00db01deb7bf8fe935fc9fa686a58bba Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:19:05 -0800 Subject: [PATCH 1/8] Update README.md for Main folder Signed-off-by: Michael Zephyr --- README.md | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index d99b5f2..e0d72cd 100644 --- a/README.md +++ b/README.md @@ -12,4 +12,13 @@ limitations under the License. --> # MONAI VISTA Repository -This is the repository for VISTA3D and VISTA2D. For the older VISTA2.5d code, please checkout the vista2.5d branch + +> ⚠️ **Research Repository Notice** +> +> This is the original research repository for VISTA2D and VISTA3D models. For production use, these models are now officially supported in: +> - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the integrated model implementations +> - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained models as MONAI Bundles +> +> We recommend using the official implementations for new projects. This repository is maintained for research reference purposes. + +This is the repository for VISTA3D and VISTA2D. For the older VISTA2.5d code, please checkout the vista2.5d branch. From b88e04d6fd29f3329d75f8cbc4287d748d4a97d6 Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:26:07 -0800 Subject: [PATCH 2/8] Update README.md Signed-off-by: Michael Zephyr --- vista3d/README.md | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/vista3d/README.md b/vista3d/README.md index bf8c911..0c5e5fb 100644 --- a/vista3d/README.md +++ b/vista3d/README.md @@ -11,6 +11,15 @@ See the License for the specific language governing permissions and limitations under the License. --> +> ⚠️ **VISTA3D Production Version Available** +> +> This is the research implementation of VISTA3D. The model is now available as a MONAI product in: +> - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation +> - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained VISTA3D models as MONAI Bundles +> - [MONAI Tutorials](https://github.com/Project-MONAI/tutorials) - Contains examples and tutorials for using VISTA3D +> +> For new projects, we recommend using the official implementation which includes optimizations and regular maintenance. + # MONAI **V**ersatile **I**maging **S**egmen**T**ation and **A**nnotation [[`Paper`](https://arxiv.org/pdf/2406.05285)] [[`Demo`](https://build.nvidia.com/nvidia/vista-3d)] [[`Checkpoint`]](https://drive.google.com/file/d/1DRYA2-AI-UJ23W1VbjqHsnHENGi0ShUl/view?usp=sharing) ## Overview From e2b33f0ef1134aa9efd9b6930f290f9126428433 Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:26:28 -0800 Subject: [PATCH 3/8] Update README.md Signed-off-by: Michael Zephyr --- vista2d/README.md | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/vista2d/README.md b/vista2d/README.md index 56d9038..0dd2274 100644 --- a/vista2d/README.md +++ b/vista2d/README.md @@ -11,6 +11,16 @@ See the License for the specific language governing permissions and limitations under the License. --> +> ⚠️ **VISTA2D Production Version Available** +> +> This is the research implementation of VISTA2D. The model is now available as a MONAI product in: +> - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation +> - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained VISTA2D models as MONAI Bundles +> - [MONAI Tutorials](https://github.com/Project-MONAI/tutorials) - Contains examples and tutorials for using VISTA2D +> +> For new projects, we recommend using the official implementation which includes optimizations and regular maintenance. + + ## Overview The **VISTA2D** is a cell segmentation training and inference pipeline for cell imaging [[`Blog`](https://developer.nvidia.com/blog/advancing-cell-segmentation-and-morphology-analysis-with-nvidia-ai-foundation-model-vista-2d/)]. From c2016f62fb51e892d212e5a9d50fba2f16fb756f Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:29:09 -0800 Subject: [PATCH 4/8] Update README.md Signed-off-by: Michael Zephyr --- README.md | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index e0d72cd..55c5454 100644 --- a/README.md +++ b/README.md @@ -15,10 +15,9 @@ limitations under the License. > ⚠️ **Research Repository Notice** > -> This is the original research repository for VISTA2D and VISTA3D models. For production use, these models are now officially supported in: -> - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the integrated model implementations +> This repository contains the original research implementations of VISTA2D and VISTA3D models (for VISTA2.5d, please see the vista2.5d branch). These models are now officially available in MONAI in: +> - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation > - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained models as MONAI Bundles +> - [MONAI Tutorials](https://github.com/Project-MONAI/tutorials) - Contains examples and tutorials for using VISTA models > -> We recommend using the official implementations for new projects. This repository is maintained for research reference purposes. - -This is the repository for VISTA3D and VISTA2D. For the older VISTA2.5d code, please checkout the vista2.5d branch. +> For new projects, we recommend using the official implementation which includes optimizations and regular maintenance. From ad4bbb35539e3cd48bf0bec0e29b29609eb44b02 Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:29:34 -0800 Subject: [PATCH 5/8] Update README.md Signed-off-by: Michael Zephyr --- vista3d/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vista3d/README.md b/vista3d/README.md index 0c5e5fb..6c84105 100644 --- a/vista3d/README.md +++ b/vista3d/README.md @@ -13,7 +13,7 @@ limitations under the License. > ⚠️ **VISTA3D Production Version Available** > -> This is the research implementation of VISTA3D. The model is now available as a MONAI product in: +> This is the research implementation of VISTA3D. The model is now officially available in MONAI in: > - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation > - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained VISTA3D models as MONAI Bundles > - [MONAI Tutorials](https://github.com/Project-MONAI/tutorials) - Contains examples and tutorials for using VISTA3D From eef53e185b67341c14cd78142d1ba9642a7dff61 Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:29:52 -0800 Subject: [PATCH 6/8] Update README.md Signed-off-by: Michael Zephyr --- vista2d/README.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/vista2d/README.md b/vista2d/README.md index 0dd2274..d9af7a4 100644 --- a/vista2d/README.md +++ b/vista2d/README.md @@ -13,14 +13,13 @@ limitations under the License. > ⚠️ **VISTA2D Production Version Available** > -> This is the research implementation of VISTA2D. The model is now available as a MONAI product in: +> This is the research implementation of VISTA2D. The model is now officially available in MONAI in: > - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation > - [MONAI Model Zoo](https://github.com/Project-MONAI/model-zoo) - Provides pre-trained VISTA2D models as MONAI Bundles > - [MONAI Tutorials](https://github.com/Project-MONAI/tutorials) - Contains examples and tutorials for using VISTA2D > > For new projects, we recommend using the official implementation which includes optimizations and regular maintenance. - ## Overview The **VISTA2D** is a cell segmentation training and inference pipeline for cell imaging [[`Blog`](https://developer.nvidia.com/blog/advancing-cell-segmentation-and-morphology-analysis-with-nvidia-ai-foundation-model-vista-2d/)]. From d3bf26a17d9bb6b51534c435576b2b6e4c939d65 Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:35:16 -0800 Subject: [PATCH 7/8] Update README.md Signed-off-by: Michael Zephyr --- vista3d/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vista3d/README.md b/vista3d/README.md index 6c84105..63b3ff5 100644 --- a/vista3d/README.md +++ b/vista3d/README.md @@ -11,7 +11,7 @@ See the License for the specific language governing permissions and limitations under the License. --> -> ⚠️ **VISTA3D Production Version Available** +> ⚠️ **Research Repository Notice** > > This is the research implementation of VISTA3D. The model is now officially available in MONAI in: > - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation From aac9925b1acf948e93351a2f79bacabc76d8a9aa Mon Sep 17 00:00:00 2001 From: Michael Zephyr Date: Fri, 6 Dec 2024 15:35:33 -0800 Subject: [PATCH 8/8] Update README.md Signed-off-by: Michael Zephyr --- vista2d/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vista2d/README.md b/vista2d/README.md index d9af7a4..7f52c53 100644 --- a/vista2d/README.md +++ b/vista2d/README.md @@ -11,7 +11,7 @@ See the License for the specific language governing permissions and limitations under the License. --> -> ⚠️ **VISTA2D Production Version Available** +> ⚠️ **Research Repository Notice** > > This is the research implementation of VISTA2D. The model is now officially available in MONAI in: > - [MONAI Core](https://github.com/Project-MONAI/MONAI) - Contains the maintained implementation