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eggnogmapper_tax_scope #46

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CeciliaDeng opened this issue Jul 4, 2024 · 4 comments
Closed

eggnogmapper_tax_scope #46

CeciliaDeng opened this issue Jul 4, 2024 · 4 comments
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discussion needed Further discussion is needed
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0.4.0

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@CeciliaDeng
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Hi @GallVp and @jasonshiller ,

I just want to inform you that eggnogmapper_tax_scope doesn't recognize taxonomy ID 171637 (Amygdaloideae). The default value 33090 (Viridiplantae) worked fine.
@CeciliaDeng CeciliaDeng added the discussion needed Further discussion is needed label Jul 4, 2024
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GallVp commented Jul 14, 2024

Thank you @CeciliaDeng

Was there a specific error?

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GallVp commented Aug 19, 2024

Provide a link to the eggnog mapper db which lists the available clades.

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GallVp commented Sep 27, 2024

Added information to the usage doc: https://github.com/PlantandFoodResearch/genepal/blob/dev/docs/usage.md#eggnog-mapper-db

@GallVp GallVp added this to the 0.4.0 milestone Sep 27, 2024
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GallVp commented Oct 6, 2024

Completed by https://github.com/PlantandFoodResearch/genepal/releases/tag/0.4.0

@GallVp GallVp closed this as completed Oct 6, 2024
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