diff --git a/CHANGELOG.md b/CHANGELOG.md index 493ef7da..5c827ec3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -24,28 +24,22 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Changed +* Change name and description of `Avg. Reads per Cell` and `Avg. Reads Usable per Cell` in QC report. * The output name of the `.pxl` file from the `annotate` step is now `*.annotated.dataset.pxl` * The output name of the `.pxl` file from the `analysis` step is now `*.analysis.dataset.pxl` -### Removed - -* Remove `--input1_pattern` and `--input2_pattern` from `single-cell amplicon` command. -* Self-correlations, e.g. CD8 vs CD8 are not longer part of the colocalization results, as these - values will always be undefined. - ### Fixed +* Fix a bug in how discarded UMIs are calculated and reported. +* Fix deflated counts in the edgelist after collapse. * Fix bug where an `r1` or `r2` in the directory part of a read file would break file name sanity checks. -### Changed - -* Change name and description of `Avg. Reads per Cell` and `Avg. Reads Usable per Cell` in QC report. - -### Fixed +### Removed -* Fix a bug in how discarded UMIs are calculated and reported. -* Fix deflated counts in the edgelist after collapse. +* Remove `--input1_pattern` and `--input2_pattern` from `single-cell amplicon` command. +* Self-correlations, e.g. CD8 vs CD8 are not longer part of the colocalization results, as these + values will always be undefined. ## [0.16.1] - 2024-01-12