Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update GATK version #3

Open
kokyriakidis opened this issue Jun 12, 2019 · 3 comments
Open

Update GATK version #3

kokyriakidis opened this issue Jun 12, 2019 · 3 comments

Comments

@kokyriakidis
Copy link

Is there a reason you use GATK 3.5 instead of the latest 4.1?
@markwoon
Copy link
Contributor

Nope. GATK 4 wasn't even out yet when we were working on this.

Feel free to submit a PR to update it.

@kokyriakidis
Copy link
Author

With this pipeline I can get solid results from PharmCAT?

@whaleyr
Copy link

whaleyr commented Jun 14, 2019

That's not really a question with a yes/no answer. This tool helps prepare data for use in PharmCAT but it gives no guarantee of whether or not the PharmCAT tool will give you results of one form or another. If you're interested in the PharmCAT project I recommend reading the docs there and submitting issues if something is unclear or not working as expected.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@markwoon @whaleyr @kokyriakidis