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[PA165980834] Bad GPML for Methylene Blue Pathway, Pharmacodynamics #80

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pharmgen opened this issue Mar 30, 2018 · 0 comments
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pharmgen commented Mar 30, 2018

Latest GPML for pathwayPA165980834 is obsolete.
Use this instead: PA165980834-new.gpml

Note that even the updated GPML has errors that must be fixed:

  • 'FAD' [id:b8d2e]: Missing PharmGKB Accession ID.
  • 'FMN' [id:c42da]: Missing PharmGKB Accession ID.
  • 'Hydrogen Peroxide' [id:c74b7]: Missing PharmGKB Accession ID.
  • 'Fe2+ Hemoglobin' [id:c7ccd]: Missing PharmGKB Accession ID.
  • 'Oxidizing Agents' [id:d9ef5]: Drug Collection must specify memberDrugs.
  • 'NAD' [id:e7195]: Missing PharmGKB Accession ID.
  • 'NADH' [id:eb3fc]: Missing PharmGKB Accession ID.
  • 'Fe3+ Methemoglobin' [id:ebea6]: Missing PharmGKB Accession ID.
  • 'reactive oxygen species' [id:f028f]: Missing PharmGKB Accession ID.
  • 'NADP' [id:b1ea5]: Missing PharmGKB Accession ID.
  • 'NADPH' [id:d94f6]: Missing PharmGKB Accession ID.
  • 'methylene blue' [id:d02f5]: Evidence should only be provided on interactions.
  • Catalysis line [id:aaf6d] (from 'CYB5R3' [id:d627e] to 'CYB5A' [id:df2f8]): Catalysis interactions can only be applied to other interactions.
  • Info Line line [id:ae491] (from 'Pentose Phosphate Pathway (Erythrocyte)' [id:d50bc] to 'G6PD' [id:c5e41]): Info labels lines are no longer allowed.
  • Biochemical Reaction line [id:d0301] (from 'NADH' [id:eb3fc] to 'NAD' [id:e7195]): Missing evidence.
  • Biochemical Reaction line [id:d0c55] (from 'methylene blue' [id:efbb7] to 'leukomethylene blue' [id:daea6]): Missing evidence.
  • Inhibition line [id:db75f] (from 'Oxidative Stress Regulatory Pathway (Erythrocyte)' [id:a063e] to 'Hydrogen Peroxide' [id:c74b7]): Missing evidence.
  • Biochemical Reaction line [id:f87ac] (from 'leukomethylene blue' [id:daea6] to 'methylene blue' [id:efbb7]): Missing evidence.
  • Inhibition line [id:fb2b0] (from 'Oxidative Stress Regulatory Pathway (Erythrocyte)' [id:a063e] to 'Oxidizing Agents' [id:d9ef5]): Missing evidence.
  • Info Line line [id:fbeff] (from 'Fe3+ Methemoglobin' [id:ebea6] to 'Methemoglobinemia' [id:e93f4]): Info labels lines are no longer allowed.
  • Biochemical Reaction line [id:b2224] (from 'NADPH' [id:d94f6] to 'NADP' [id:b1ea5]): Missing evidence.
  • 'Methemoglobinemia' [id:e93f4]: Not linked to anything.
  • 'Pentose Phosphate Pathway (Erythrocyte)' [id:d50bc]: Not linked to anything.
@pharmgen pharmgen added this to the Update GPML milestone Mar 30, 2018
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