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Metabolic-Modeling---Yield-Analysis-of-PhaG

Repository containing scripts and analysis for Qiang et al., "Metabolic engineering strategies to produce medium-chain oleochemicals via acyl-ACP:CoA transacylase activity".

Contents

  • Oleo_iML1515.xml (A modified SBML version of the iML1515 model containing olechemical reactions)
  • PhaG yield analysis.ipynb (ipython notebook calculating the theoretical yield of several products via different pathways)

Python Dependencies

  • cobra 0.22.1
  • pandas 1.3.2