From 521e9592a54c1e4fcf3112bcb55408934e3a4256 Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Fri, 26 Jan 2024 10:36:10 -0500
Subject: [PATCH 1/4] Add dependabot config.

---
 .github/dependabot.yml | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100644 .github/dependabot.yml

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 000000000..2b5fd1113
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,18 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+
+version: 2
+updates:
+  - package-ecosystem: "github-actions" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    labels: ["maintenance", "ignore-for-release"]
+    assignees: ["tsalo"]
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: pip
+    directory: "/"
+    labels: ["maintenance", "ignore-for-release"]
+    schedule:
+      interval: weekly

From 33d05f240981953fd668e037cf4a9860e618511c Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Fri, 26 Jan 2024 10:36:17 -0500
Subject: [PATCH 2/4] Add other quality of life config files.

---
 .github/ISSUE_TEMPLATE/bug_report.md      | 34 +++++++++++++++++++++++
 .github/ISSUE_TEMPLATE/config.yml         |  4 +++
 .github/ISSUE_TEMPLATE/feature_request.md | 16 +++++++++++
 .github/pull_request_template.md          |  9 ++++++
 .github/release.yml                       | 20 +++++++++++++
 5 files changed, 83 insertions(+)
 create mode 100644 .github/ISSUE_TEMPLATE/bug_report.md
 create mode 100644 .github/ISSUE_TEMPLATE/config.yml
 create mode 100644 .github/ISSUE_TEMPLATE/feature_request.md
 create mode 100644 .github/pull_request_template.md
 create mode 100644 .github/release.yml

diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md
new file mode 100644
index 000000000..21eacfa37
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/bug_report.md
@@ -0,0 +1,34 @@
+---
+name: Bug report
+about: Something not working as described? Missing/incorrect documentation? This is the place.
+title: ''
+labels: 'bug'
+assignees: ''
+
+---
+## Summary
+<!--What is the nature of the bug?-->
+
+## Additional details
+<!--Please fill in the following details-->
+- CuBIDS version:
+- Docker version:
+- Singularity version:
+- Datalad version:
+
+### What were you trying to do?
+
+### What did you expect to happen?
+
+### What actually happened?
+
+## Reproducing the bug
+<!--Please share any steps you performed that revealed the bug-->
+<!--Please include any code snippets.
+Enclose them in triple back-ticks (```)
+Like this:
+
+```
+<code>
+```
+-->
diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml
new file mode 100644
index 000000000..574590db2
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/config.yml
@@ -0,0 +1,4 @@
+contact_links:
+  - name: Usage question
+    url: https://neurostars.org/tags/c/software-support/234/cubids
+    about: Please ask questions about using CuBIDS on NeuroStars.
diff --git a/.github/ISSUE_TEMPLATE/feature_request.md b/.github/ISSUE_TEMPLATE/feature_request.md
new file mode 100644
index 000000000..f3d8ef67b
--- /dev/null
+++ b/.github/ISSUE_TEMPLATE/feature_request.md
@@ -0,0 +1,16 @@
+---
+name: Feature request
+about: Got an idea for a new feature, or changing an existing one? This is the place.
+title: ''
+labels: 'enhancement'
+assignees: ''
+
+---
+## Summary
+<!--What would you like changed/added and why?-->
+
+## Additional details
+<!--What would be the benefit?-->
+
+## Next steps
+<!--Do you have any ideas about the implementation?-->
diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md
new file mode 100644
index 000000000..b3b3b454c
--- /dev/null
+++ b/.github/pull_request_template.md
@@ -0,0 +1,9 @@
+Closes .
+
+## Changes proposed in this pull request
+
+-
+
+## Documentation that should be reviewed
+
+-
diff --git a/.github/release.yml b/.github/release.yml
new file mode 100644
index 000000000..0c8fee8e8
--- /dev/null
+++ b/.github/release.yml
@@ -0,0 +1,20 @@
+changelog:
+  exclude:
+    labels:
+      - ignore-for-release
+  categories:
+    - title: 🛠 Breaking Changes
+      labels:
+        - breaking-change
+    - title: 🎉 Exciting New Features
+      labels:
+        - enhancement
+    - title: 👎 Deprecations
+      labels:
+        - deprecation
+    - title: 🐛 Bug Fixes
+      labels:
+        - bug
+    - title: Other Changes
+      labels:
+        - "*"

From b562a678f01f86034c693a85c842a9fa68d1b3a4 Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Fri, 26 Jan 2024 10:38:14 -0500
Subject: [PATCH 3/4] Run black

---
 cubids/cli.py             | 1 +
 cubids/constants.py       | 1 +
 cubids/cubids.py          | 1 +
 cubids/metadata_merge.py  | 1 +
 cubids/tests/test_bond.py | 1 +
 cubids/tests/utils.py     | 1 +
 cubids/utils.py           | 1 +
 cubids/validator.py       | 1 +
 cubids/workflows.py       | 1 +
 9 files changed, 9 insertions(+)

diff --git a/cubids/cli.py b/cubids/cli.py
index a55cecb0d..94f869c62 100644
--- a/cubids/cli.py
+++ b/cubids/cli.py
@@ -1,4 +1,5 @@
 """Console script for cubids."""
+
 import argparse
 import logging
 import os
diff --git a/cubids/constants.py b/cubids/constants.py
index 21c8982cd..e383b6853 100644
--- a/cubids/constants.py
+++ b/cubids/constants.py
@@ -1,4 +1,5 @@
 """Constants for CuBIDS."""
+
 ID_VARS = set(["KeyGroup", "ParamGroup", "FilePath"])
 NON_KEY_ENTITIES = set(["subject", "session", "extension"])
 # Multi-dimensional keys SliceTiming
diff --git a/cubids/cubids.py b/cubids/cubids.py
index 842215e0c..2339dc21a 100644
--- a/cubids/cubids.py
+++ b/cubids/cubids.py
@@ -1,4 +1,5 @@
 """Main module."""
+
 import csv
 import json
 import os
diff --git a/cubids/metadata_merge.py b/cubids/metadata_merge.py
index b542e691c..dc0cbbab6 100644
--- a/cubids/metadata_merge.py
+++ b/cubids/metadata_merge.py
@@ -1,4 +1,5 @@
 """Tools for merging metadata."""
+
 import json
 from collections import defaultdict
 from copy import deepcopy
diff --git a/cubids/tests/test_bond.py b/cubids/tests/test_bond.py
index 5a0c3aac1..15bfc35f0 100644
--- a/cubids/tests/test_bond.py
+++ b/cubids/tests/test_bond.py
@@ -1,4 +1,5 @@
 """Tests for `cubids` package."""
+
 import json
 import os
 import subprocess
diff --git a/cubids/tests/utils.py b/cubids/tests/utils.py
index 6f786e46f..22263f9ba 100644
--- a/cubids/tests/utils.py
+++ b/cubids/tests/utils.py
@@ -1,4 +1,5 @@
 """Utility functions for CuBIDS' tests."""
+
 import hashlib
 import json
 import os
diff --git a/cubids/utils.py b/cubids/utils.py
index 56704d8c6..c94d9e79a 100644
--- a/cubids/utils.py
+++ b/cubids/utils.py
@@ -1,4 +1,5 @@
 """Miscellaneous utility functions for CuBIDS."""
+
 import re
 from pathlib import Path
 
diff --git a/cubids/validator.py b/cubids/validator.py
index 3f6700417..74343c94b 100644
--- a/cubids/validator.py
+++ b/cubids/validator.py
@@ -1,4 +1,5 @@
 """Methods for validating BIDS datasets."""
+
 import glob
 import json
 import logging
diff --git a/cubids/workflows.py b/cubids/workflows.py
index 37793981a..3384f1cc5 100644
--- a/cubids/workflows.py
+++ b/cubids/workflows.py
@@ -1,4 +1,5 @@
 """First order workflows in CuBIDS."""
+
 import json
 import logging
 import os

From 1ccd6c14a2ae6d1f0e8a5270fb04571529c2e238 Mon Sep 17 00:00:00 2001
From: Taylor Salo <tsalo006@fiu.edu>
Date: Wed, 31 Jan 2024 16:36:16 -0500
Subject: [PATCH 4/4] Remove containers from issue templates.

---
 .github/ISSUE_TEMPLATE/bug_report.md | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md
index 21eacfa37..d57120b43 100644
--- a/.github/ISSUE_TEMPLATE/bug_report.md
+++ b/.github/ISSUE_TEMPLATE/bug_report.md
@@ -12,8 +12,6 @@ assignees: ''
 ## Additional details
 <!--Please fill in the following details-->
 - CuBIDS version:
-- Docker version:
-- Singularity version:
 - Datalad version:
 
 ### What were you trying to do?