diff --git a/src/pathme/constants.py b/src/pathme/constants.py index b8ec36f..6a2747c 100644 --- a/src/pathme/constants.py +++ b/src/pathme/constants.py @@ -36,7 +36,7 @@ def get_data_dir() -> str: REACTOME = 'reactome' REACTOME_DIR = os.path.join(DATA_DIR, REACTOME) REACTOME_BEL = os.path.join(REACTOME_DIR, 'bel') -REACTOME_FILES = os.path.join(REACTOME_DIR, 'rdf') +REACTOME_FILES = os.path.join(REACTOME_DIR, 'rdf', 'biopax') #: WikiPathways WIKIPATHWAYS = 'wikipathways' @@ -141,7 +141,7 @@ def ensure_pathme_folders(): KEGG_KGML_URL = 'http://rest.kegg.jp/get/{}/kgml' #: Reactome RDF -RDF_REACTOME = 'ftp://ftp.ebi.ac.uk/pub/databases/RDF/reactome/r67/reactome-biopax.tar.bz2' +RDF_REACTOME = 'ftp://ftp.ebi.ac.uk/pub/databases/RDF/reactome/r71/reactome-biopax.tar.bz2' #: WikiPathways RDF RDF_WIKIPATHWAYS = 'http://data.wikipathways.org/20200310/rdf/wikipathways-20200310-rdf-wp.zip'