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How to use vcf from pbsv with Flanklin? #740

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NannapatS opened this issue Jan 21, 2025 · 0 comments
Open

How to use vcf from pbsv with Flanklin? #740

NannapatS opened this issue Jan 21, 2025 · 0 comments

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@NannapatS
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I need to use Flanklin for variant interpretation with vcf file from Pbsv. My first result was failed. Then, I modified its header by using header from DRAGEN that my colleague recommended me and then it still was failed as below detail

First time, I uploaded vcf for SNV (from DeepTrio), SV (from pbsv) and CNV (from HiFiCNV). Second time, I uploaded vcf only SNV and SV. Now, two sets had same result, so they were stucked in the middle at 34%. Please help to give me recommendation , how I can correct this issue. How to use vcf from pbsv and HiFiCNV with Flanklin? Please help to guide me. Thanks in advance for your support.

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