From 8c41b0a2bcaa16894c5fe39ac0ffb9ed92170b24 Mon Sep 17 00:00:00 2001
From: Josh King <jking@chambana.net>
Date: Thu, 1 Jul 2021 13:49:51 -0400
Subject: [PATCH] Finish azure job fixes.

---
 EuropepmcUpload/function.json                 | 10 ++++++++++
 {europepmcUpload => EuropepmcUpload}/index.js | 14 +++++++++-----
 europepmcUpload/function.json                 |  6 ------
 local.settings.json                           |  8 ++++++--
 package.json                                  |  2 +-
 script.js                                     |  3 +++
 6 files changed, 29 insertions(+), 14 deletions(-)
 create mode 100644 EuropepmcUpload/function.json
 rename {europepmcUpload => EuropepmcUpload}/index.js (88%)
 delete mode 100644 europepmcUpload/function.json
 create mode 100644 script.js

diff --git a/EuropepmcUpload/function.json b/EuropepmcUpload/function.json
new file mode 100644
index 0000000..ea8c551
--- /dev/null
+++ b/EuropepmcUpload/function.json
@@ -0,0 +1,10 @@
+{
+  "bindings": [
+    {
+      "schedule": "0 0 3 * * *",
+      "name": "europepmcUpload",
+      "type": "timerTrigger",
+      "direction": "in"
+    }
+  ]
+}
diff --git a/europepmcUpload/index.js b/EuropepmcUpload/index.js
similarity index 88%
rename from europepmcUpload/index.js
rename to EuropepmcUpload/index.js
index 650cecf..c644250 100644
--- a/europepmcUpload/index.js
+++ b/EuropepmcUpload/index.js
@@ -3,12 +3,15 @@ const fs = require('fs');
 const { create } = require('xmlbuilder2');
 const ftp = require('basic-ftp');
 
-let FTP_USER, FTP_PASS;
+let FTP_USER, FTP_PASS, FTP_HOST, FTP_DIR;
 let URL = 'http://prereview2-staging.azurewebsites.net';
+const TMPDIR = process.env.TMPDIR || '/tmp'
 if (process.env.NODE_ENV === 'production') {
   URL = 'https://prereview.org';
   FTP_USER = process.env.FTP_USER;
   FTP_PASS = process.env.FTP_PASS;
+  FTP_HOST = process.env.FTP_HOST;
+  FTP_DIR = process.env.FTP_DIR;
 }
 
 // only fetches preprints with reviews
@@ -103,10 +106,10 @@ const buildXML = async () => {
 
   const output = xml.end({ prettyPrint: true });
 
-  fs.writeFile('europepmc.xml', output, (error) => {
+  fs.writeFile(`${TMPDIR}/europepmc.xml`, output, (error) => {
     if (error) throw error;
     console.log(
-      'An XML file of all reviews in Europe PMC LabsLink format has been saved to europepmc.xml!',
+      `An XML file of all reviews in Europe PMC LabsLink format has been saved to ${TMPDIR}/europepmc.xml!`,
     );
   });
 };
@@ -116,13 +119,14 @@ const uploadToEuropePMC = async () => {
   client.ftp.verbose = true;
   try {
     await client.access({
-      host: 'TBD',
+      host: `${FTP_HOST}`,
       user: `${FTP_USER}`,
       password: `${FTP_PASS}`,
       secure: false,
     });
     console.log(await client.list());
-    await client.uploadFrom('europepmc.xml', 'europepmc.xml');
+    await client.cd(`${FTP_DIR}`);
+    await client.uploadFrom(`${TMPDIR}/europepmc.xml`, 'links.xml');
   } catch (err) {
     console.log(err);
   }
diff --git a/europepmcUpload/function.json b/europepmcUpload/function.json
deleted file mode 100644
index 3bdfa43..0000000
--- a/europepmcUpload/function.json
+++ /dev/null
@@ -1,6 +0,0 @@
-{
-  "schedule": "0 0 3 * * *",
-  "name": "europepmcUpload",
-  "type": "timerTrigger",
-  "direction": "in"
-}
diff --git a/local.settings.json b/local.settings.json
index 5240831..993e8b7 100644
--- a/local.settings.json
+++ b/local.settings.json
@@ -2,6 +2,10 @@
   "IsEncrypted": false,
   "Values": {
     "FUNCTIONS_WORKER_RUNTIME": "node",
-    "AzureWebJobsStorage": ""
-  }
+    "AzureWebJobsStorage": "DefaultEndpointsProtocol=https;AccountName=prereview2volumes;AccountKey=/xtch1AyHtUuWONP/xLEOYh7YfNE1VAZL1pkKY05VnRawtEEVTt3ES5WA9h6Ef8G6rbq0qRTAJ84sa3treLNIg==;EndpointSuffix=core.windows.net",
+    "FUNCTIONS_EXTENSION_VERSION": "~3",
+    "APPINSIGHTS_INSTRUMENTATIONKEY": "4a4f083d-ca7c-4996-a1af-0f40689e9dc9",
+    "APPLICATIONINSIGHTS_CONNECTION_STRING": "InstrumentationKey=4a4f083d-ca7c-4996-a1af-0f40689e9dc9;IngestionEndpoint=https://centralus-0.in.applicationinsights.azure.com/"
+  },
+  "ConnectionStrings": {}
 }
\ No newline at end of file
diff --git a/package.json b/package.json
index fe8b4b5..6cbc503 100644
--- a/package.json
+++ b/package.json
@@ -29,7 +29,7 @@
     "./europepmcUpload/index.js"
   ],
   "scripts": {
-    "start": "npx ./europepmcUpload/index.js",
+    "start": "npx ./script.js",
     "lint": "eslint --ignore-path .gitignore --ext js --fix ./feed"
   },
   "engines": {
diff --git a/script.js b/script.js
new file mode 100644
index 0000000..bb4f3a1
--- /dev/null
+++ b/script.js
@@ -0,0 +1,3 @@
+const upload = require('./EuropepmcUpload/index.js');
+
+upload()