limix installation via anaconda/windows

[naarkhoo]

I am using windows 7, and already have installed the latest version of "anaconda".
I am trying to install your package via "pip install limix", the first error, I got was about visual studio, so, I downloaded visual studio for python (VCForPython27.msi), installed it, and added it to the environment variable "PATH".

Now I am getting a different error :

C:\Users\ndv680\AppData\Local\Continuum\Anaconda>pip install limix
Collecting limix
Using cached limix-0.7.12.tar.gz
Requirement already satisfied (use --upgrade to upgrade): Cython in c:\users\ndv680\appdata\local\continuum\anaconda\lib\site-packag
es (from limix)
Requirement already satisfied (use --upgrade to upgrade): h5py in c:\users\ndv680\appdata\local\continuum\anaconda\lib\site-packages
(from limix)
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.6.1 in c:\users\ndv680\appdata\local\continuum\anaconda\lib\site-
packages (from h5py->limix)
Requirement already satisfied (use --upgrade to upgrade): six in c:\users\ndv680\appdata\local\continuum\anaconda\lib\site-packages
(from h5py->limix)
Building wheels for collected packages: limix
Running setup.py bdist_wheel for limix
Complete output from command C:\Users\ndv680\AppData\Local\Continuum\Anaconda\python.exe -c "import setuptools;file='c:\users
\ndv680\appdata\local\temp\pip-build-mjzxp0\limix\setup.py';exec(compile(open(file).read().replace('\r\n', '\n'), _file
_, 'exec'))" bdist_wheel -d c:\users\ndv680\appdata\local\temp\tmpb4vkblpip-wheel-:
running bdist_wheel
running build
running build_ext
building 'deprecated._core' extension
creating build
creating build\temp.win-amd64-2.7
creating build\temp.win-amd64-2.7\Release
creating build\temp.win-amd64-2.7\Release\src
creating build\temp.win-amd64-2.7\Release\src\interfaces
creating build\temp.win-amd64-2.7\Release\src\interfaces\python
creating build\temp.win-amd64-2.7\Release\src\limix
creating build\temp.win-amd64-2.7\Release\src\limix\covar
creating build\temp.win-amd64-2.7\Release\src\limix\gp
creating build\temp.win-amd64-2.7\Release\src\limix\io
creating build\temp.win-amd64-2.7\Release\src\limix\likelihood
creating build\temp.win-amd64-2.7\Release\src\limix\LMM
creating build\temp.win-amd64-2.7\Release\src\limix\LMM_forest
creating build\temp.win-amd64-2.7\Release\src\limix\mean
creating build\temp.win-amd64-2.7\Release\src\limix\modules
creating build\temp.win-amd64-2.7\Release\src\limix\utils
creating build\temp.win-amd64-2.7\Release\External
creating build\temp.win-amd64-2.7\Release\External\nlopt
creating build\temp.win-amd64-2.7\Release\External\nlopt\direct
creating build\temp.win-amd64-2.7\Release\External\nlopt\cdirect
creating build\temp.win-amd64-2.7\Release\External\nlopt\praxis
creating build\temp.win-amd64-2.7\Release\External\nlopt\luksan
creating build\temp.win-amd64-2.7\Release\External\nlopt\crs
creating build\temp.win-amd64-2.7\Release\External\nlopt\mlsl
creating build\temp.win-amd64-2.7\Release\External\nlopt\mma
creating build\temp.win-amd64-2.7\Release\External\nlopt\cobyla
creating build\temp.win-amd64-2.7\Release\External\nlopt\newuoa
creating build\temp.win-amd64-2.7\Release\External\nlopt\neldermead
creating build\temp.win-amd64-2.7\Release\External\nlopt\auglag
C:\Users\ndv680\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS-
/DNDEBUG -Isrc -IExternal -IExternal/nlopt -I./External/nlopt/stogo -I./External/nlopt/util -I./External/nlopt/direct -I./External/n
lopt/cdirect -I./External/nlopt/praxis -I./External/nlopt/luksan -I./External/nlopt/crs -I./External/nlopt/mlsl -I./External/nlopt/m
ma -I./External/nlopt/cobyla -I./External/nlopt/newuoa -I./External/nlopt/neldermead -I./External/nlopt/auglag -I./External/nlopt/bo
byqa -I./External/nlopt/isres -I./External/nlopt/slsqp -I./External/nlopt/api -I./External/nlopt/esch -IC:\Users\ndv680\AppData\Loca
l\Continuum\Anaconda\lib\site-packages\numpy\core\include -IC:\Users\ndv680\AppData\Local\Continuum\Anaconda\include -IC:\Users\ndv6
80\AppData\Local\Continuum\Anaconda\PC /Tp./src\interfaces\python\limix_wrap.cpp /Fobuild\temp.win-amd64-2.7\Release./src\interface
s\python\limix_wrap.obj -Wno-comment -Wno-unused-but-set-variable -Wno-overloaded-virtual -Wno-uninitialized -Wno-unused-const-varia
ble -Wno-unknown-warning-option -Wno-shorten-64-to-32
cl : Command line error D8021 : invalid numeric argument '/Wno-comment'
error: command 'C:\Users\ndv680\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe
' failed with exit status 2

Failed building wheel for limix
Failed to build limix
Installing collected packages: limix
Running setup.py install for limix
Complete output from command C:\Users\ndv680\AppData\Local\Continuum\Anaconda\python.exe -c "import setuptools, tokenize;file_
_='c:\users\ndv680\appdata\local\temp\pip-build-mjzxp0\limix\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file
).read().replace('\r\n', '\n'), file, 'exec'))" install --record c:\users\ndv680\appdata\local\temp\pip-ybs1p4-record\install-re
cord.txt --single-version-externally-managed --compile:
running install
running build
running build_ext
building 'deprecated._core' extension
C:\Users\ndv680\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.exe /c /nologo /Ox /MD /W3 /GS

• /DNDEBUG -Isrc -IExternal -IExternal/nlopt -I./External/nlopt/stogo -I./External/nlopt/util -I./External/nlopt/direct -I./External
  /nlopt/cdirect -I./External/nlopt/praxis -I./External/nlopt/luksan -I./External/nlopt/crs -I./External/nlopt/mlsl -I./External/nlopt
  /mma -I./External/nlopt/cobyla -I./External/nlopt/newuoa -I./External/nlopt/neldermead -I./External/nlopt/auglag -I./External/nlopt/
  bobyqa -I./External/nlopt/isres -I./External/nlopt/slsqp -I./External/nlopt/api -I./External/nlopt/esch -IC:\Users\ndv680\AppData\Lo
  cal\Continuum\Anaconda\lib\site-packages\numpy\core\include -IC:\Users\ndv680\AppData\Local\Continuum\Anaconda\include -IC:\Users\nd
  v680\AppData\Local\Continuum\Anaconda\PC /Tp./src\interfaces\python\limix_wrap.cpp /Fobuild\temp.win-amd64-2.7\Release./src\interfa
  ces\python\limix_wrap.obj -Wno-comment -Wno-unused-but-set-variable -Wno-overloaded-virtual -Wno-uninitialized -Wno-unused-const-var
  iable -Wno-unknown-warning-option -Wno-shorten-64-to-32
  cl : Command line error D8021 : invalid numeric argument '/Wno-comment'
  error: command 'C:\Users\ndv680\AppData\Local\Programs\Common\Microsoft\Visual C++ for Python\9.0\VC\Bin\amd64\cl.e
  xe' failed with exit status 2

my googling result http://stackoverflow.com/questions/13717551/1cl-command-line-error-d8021-invalid-numeric-argument-wno-deprecated-er
I appreciate to hear your comments on that.

[zwang10]

I got the same problem.

[chenxinjx]

I encountered the same problem.