From cd7f6174196b5d30473384a38d1bc9848dc59ac6 Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Wed, 14 Aug 2024 13:30:41 +0200 Subject: [PATCH 1/7] Added some info chla_introduction.md --- sections/chla_introduction.md | 30 +++++++++++++++++++++++++++--- 1 file changed, 27 insertions(+), 3 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 8408ba7..03abd48 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -7,6 +7,29 @@ The most important actions to be taken are summarized in this simple cheat sheet This short summary allows the reader check under time pressure whether key points are taken into account prior to deployment. We recommend reading each chapter in detail to ensure the best quality data. +Pre-deployment/Deployment +(1) Check that sensors are in good condition, and you have selected the best option for the planned mission. +- BEST: Do two-point calibration ({numref}two_point_calibration). +(2) Mount the sensor(s) ({numref}sensors_integration). +(3) Configure sensor for deployment ({numref}sensor_configuration). +(4) Dark count assessment in the workshop? +(5) In-situ reference measurements, recommended using hierarchy of decreasing quality: - BEST: Optodes attached to a CTD ({numref}deployment_ship_CTD). - BEST: multiple co-located CTD casts. - GOOD: ?? - OK: ?? + +Mission and Real Time data flow ({numref}mission-execution) +(6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). + +Recovery ({numref}post-recovery) +(7) Keep sensor ON outside the water to assess any issues related to being in water?? +(8) Download data. +(9) In-situ reference measurements, using hierarchy of decreasing quality as mentioned above. +(10) Clean and store the sensor. + +DMQC ({numref}dmqc) +(11) Determine and correct dark count and scale factor + +Data sharing ({numref}data-sharing) +(12) Share high quality data in public open access archives. + ..... @@ -17,9 +40,10 @@ We recommend reading each chapter in detail to ensure the best quality data. | Sensor / Glider | Slocum | Autosub/ ALR (NOC) | Seaglider | Deepglider | SeaExplorer | Spray | Information | |---|---|---|---|---|---|---|---| | SFC - Seapoint | | | | | | X | | -| | | | | | | | | -| | | | | | | | | -| | | | | | | | | +| RBR Tridente | | | | | X | | [Link](https://rbr-global.com/products/sensors/rbrtridente/) | +| WetLabs ECOPuck (FLBBCD, FLBBPC, FLNTU, FLBBPE) | X | | X | | X | | [Link](https://www.seabird.com/eco-puck/product?id=60762467723) | +| Seabird SeaOWL | X | | | | X | | [Link](https://www.seabird.com/seaowl-uv-a-sea-oil-in-water-locator/product?id=60762467737) | +| TriOS Nanoflu | | | | | X | | [Link](https://www.trios.de/en/nanoflu.html) | From 7d2405589a8ec999faefd2f021d2c73d4709ccb4 Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Wed, 14 Aug 2024 15:24:23 +0200 Subject: [PATCH 2/7] Fixed the 1)2)3) etc. lines chla_introduction.md --- sections/chla_introduction.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 03abd48..13df77c 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -7,7 +7,7 @@ The most important actions to be taken are summarized in this simple cheat sheet This short summary allows the reader check under time pressure whether key points are taken into account prior to deployment. We recommend reading each chapter in detail to ensure the best quality data. -Pre-deployment/Deployment +**Pre-deployment/Deployment** (1) Check that sensors are in good condition, and you have selected the best option for the planned mission. - BEST: Do two-point calibration ({numref}two_point_calibration). (2) Mount the sensor(s) ({numref}sensors_integration). @@ -15,23 +15,23 @@ Pre-deployment/Deployment (4) Dark count assessment in the workshop? (5) In-situ reference measurements, recommended using hierarchy of decreasing quality: - BEST: Optodes attached to a CTD ({numref}deployment_ship_CTD). - BEST: multiple co-located CTD casts. - GOOD: ?? - OK: ?? -Mission and Real Time data flow ({numref}mission-execution) +**Mission and Real Time data flow** ({numref}`mission-execution`) (6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). -Recovery ({numref}post-recovery) +**Recovery** ({numref}`post-recovery`) (7) Keep sensor ON outside the water to assess any issues related to being in water?? (8) Download data. (9) In-situ reference measurements, using hierarchy of decreasing quality as mentioned above. (10) Clean and store the sensor. -DMQC ({numref}dmqc) +**DMQC** ({numref}`dmqc`) (11) Determine and correct dark count and scale factor -Data sharing ({numref}data-sharing) +**Data sharing** ({numref}`data-sharing`) (12) Share high quality data in public open access archives. -..... +.....?? ## Overview sensor glider combinations From 1776286ba04b4c9b25a4a95a2f05239981b5e7cc Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Wed, 14 Aug 2024 16:09:12 +0200 Subject: [PATCH 3/7] Fixed indent --- sections/chla_introduction.md | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 13df77c..71ea2ff 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -8,12 +8,16 @@ This short summary allows the reader check under time pressure whether key point We recommend reading each chapter in detail to ensure the best quality data. **Pre-deployment/Deployment** -(1) Check that sensors are in good condition, and you have selected the best option for the planned mission. -- BEST: Do two-point calibration ({numref}two_point_calibration). +(1) Check that sensors are in good condition, and you have selected the best option for the planned mission. + - BEST: Do two-point calibration ({numref}`two_point_calibration`). (2) Mount the sensor(s) ({numref}sensors_integration). (3) Configure sensor for deployment ({numref}sensor_configuration). (4) Dark count assessment in the workshop? -(5) In-situ reference measurements, recommended using hierarchy of decreasing quality: - BEST: Optodes attached to a CTD ({numref}deployment_ship_CTD). - BEST: multiple co-located CTD casts. - GOOD: ?? - OK: ?? +(5) In-situ reference measurements, recommended using hierarchy of decreasing quality: + - BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`). + - BEST: multiple co-located CTD casts. + - GOOD: ?? + - OK: ?? **Mission and Real Time data flow** ({numref}`mission-execution`) (6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). From 6368a08e008cce28d0ba3abf4fe5af5c2b8aa55d Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Thu, 15 Aug 2024 15:20:53 +0200 Subject: [PATCH 4/7] Update chla_pre_deployment.md --- sections/chla_pre_deployment.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/sections/chla_pre_deployment.md b/sections/chla_pre_deployment.md index 1cedcaa..b77bc71 100644 --- a/sections/chla_pre_deployment.md +++ b/sections/chla_pre_deployment.md @@ -15,6 +15,8 @@ ## Pre-deployment calibration ... +(two_point_calibration)= +### Two point calibration procedure (calibration_procedure)= #### Calibration procedure From c28c487db2b8a703ecbc6022ddc7ef4f07a95c15 Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Thu, 15 Aug 2024 15:22:00 +0200 Subject: [PATCH 5/7] used
instead of indent --- sections/chla_introduction.md | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 71ea2ff..447a3c2 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -10,14 +10,12 @@ We recommend reading each chapter in detail to ensure the best quality data. **Pre-deployment/Deployment** (1) Check that sensors are in good condition, and you have selected the best option for the planned mission. - BEST: Do two-point calibration ({numref}`two_point_calibration`). -(2) Mount the sensor(s) ({numref}sensors_integration). -(3) Configure sensor for deployment ({numref}sensor_configuration). +(2) Mount the sensor(s) ({numref}`sensors_integration`). +(3) Configure sensor for deployment ({numref}`sensor_configuration`). Make sure your glider is configured to record phase with correct timings. (4) Dark count assessment in the workshop? -(5) In-situ reference measurements, recommended using hierarchy of decreasing quality: - - BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`). - - BEST: multiple co-located CTD casts. - - GOOD: ?? - - OK: ?? +(5) In-situ reference measurements, recommended using hierarchy of decreasing quality +
- BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`).
- BEST: multiple co-located CTD casts
- GOOD: ??
- OK: ?? + **Mission and Real Time data flow** ({numref}`mission-execution`) (6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). From b61c1ff75952cf78f4db6c996a8afdb27f530886 Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Thu, 15 Aug 2024 15:26:35 +0200 Subject: [PATCH 6/7] Ok figured it out and no need tu use
--- sections/chla_introduction.md | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 447a3c2..4846ff1 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -13,23 +13,26 @@ We recommend reading each chapter in detail to ensure the best quality data. (2) Mount the sensor(s) ({numref}`sensors_integration`). (3) Configure sensor for deployment ({numref}`sensor_configuration`). Make sure your glider is configured to record phase with correct timings. (4) Dark count assessment in the workshop? -(5) In-situ reference measurements, recommended using hierarchy of decreasing quality -
- BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`).
- BEST: multiple co-located CTD casts
- GOOD: ??
- OK: ?? +(5) In-situ reference measurements, recommended using hierarchy of decreasing quality + - BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`). + - BEST: multiple co-located CTD casts. + - GOOD: ?? + - OK: ?? **Mission and Real Time data flow** ({numref}`mission-execution`) (6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). **Recovery** ({numref}`post-recovery`) -(7) Keep sensor ON outside the water to assess any issues related to being in water?? -(8) Download data. -(9) In-situ reference measurements, using hierarchy of decreasing quality as mentioned above. +(7) Keep sensor ON outside the water to assess any issues related to being in water. +(8) Download data. +(9) In-situ reference measurements, using hierarchy of decreasing quality as mentioned above. (10) Clean and store the sensor. -**DMQC** ({numref}`dmqc`) -(11) Determine and correct dark count and scale factor +**DMQC** ({numref}`dmqc`) +(11) Determine and correct dark count and scale factor. -**Data sharing** ({numref}`data-sharing`) +**Data sharing** ({numref}`data-sharing`) (12) Share high quality data in public open access archives. From 61d3c43fca82504c3f58e7d2baccaba7d86fda22 Mon Sep 17 00:00:00 2001 From: Chiara Monforte <75482817+MOchiara@users.noreply.github.com> Date: Thu, 15 Aug 2024 16:04:34 +0200 Subject: [PATCH 7/7] Fixed small issues --- sections/chla_introduction.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/sections/chla_introduction.md b/sections/chla_introduction.md index 4846ff1..15fbf24 100644 --- a/sections/chla_introduction.md +++ b/sections/chla_introduction.md @@ -12,7 +12,7 @@ We recommend reading each chapter in detail to ensure the best quality data. - BEST: Do two-point calibration ({numref}`two_point_calibration`). (2) Mount the sensor(s) ({numref}`sensors_integration`). (3) Configure sensor for deployment ({numref}`sensor_configuration`). Make sure your glider is configured to record phase with correct timings. -(4) Dark count assessment in the workshop? +(4) Dark count assessment in the workshop? (5) In-situ reference measurements, recommended using hierarchy of decreasing quality - BEST: Optodes attached to a CTD ({numref}`deployment_ship_CTD`). - BEST: multiple co-located CTD casts. @@ -21,7 +21,7 @@ We recommend reading each chapter in detail to ensure the best quality data. **Mission and Real Time data flow** ({numref}`mission-execution`) -(6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}rtqc). +(6) Ensure data stream is set up correctly including relevant metadata is sent to allow real time data corrections ({numref}`rtqc`). **Recovery** ({numref}`post-recovery`) (7) Keep sensor ON outside the water to assess any issues related to being in water.