diff --git a/src/ontology/ogms.owl b/src/ontology/ogms.owl index 99ca6d5..6aedeed 100644 --- a/src/ontology/ogms.owl +++ b/src/ontology/ogms.owl @@ -1,36 +1,23 @@ - - - - - - - - - -]> - - - + xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" + xmlns:obo="http://purl.obolibrary.org/obo/" + xmlns:foaf="http://xmlns.com/foaf/0.1/" + xmlns:dc="http://purl.org/dc/elements/1.1/"> - Daniel Merico - 2009-08-07 + + + Sivaram Arabandi - Alan Ruttenberg - Werner Ceusters - Lindsay Cowell - This ontology is in early development. Expect it to change. - 2011-09-20 + Albert Goldfain + 2009-08-07 The Ontology for General Medical Science (OGMS) is based on the papers Toward an Ontological Treatment of Disease and Diagnosis and On Carcinomas and Other Pathological Entities. The ontology attempts to address some of the issues raised at the Workshop on Ontology of Diseases (Dallas, TX). OGMS was formerly called the clinical phenotype ontology. Terms from OGMS hang from the Basic Formal Ontology. The latest version of OGMS is always available at http://purl.obolibrary.org/obo/ogms.owl @@ -41,15 +28,17 @@ The OGMS developer site is http://code.google.com/p/ogms/ The discussion group is http://groups.google.com/group/ogms-discuss If you are interested in participating in the development of OGMS, please send email to albertgoldfain@gmail.com. Be sure to include a google-account username with your request (this will be the username associated with a gmail address). + Alan Ruttenberg + Werner Ceusters + 2011-09-20 + Bill Hogan + Lindsay Cowell Cornelius Rosse Richard Scheuermann - Bill Hogan - Albert Goldfain - Barry Smith + This ontology is in early development. Expect it to change. Anand Kumar - - - + Daniel Merico + Barry Smith @@ -67,7 +56,7 @@ If you are interested in participating in the development of OGMS, please send e - + definition @@ -75,7 +64,7 @@ If you are interested in participating in the development of OGMS, please send e - + editor note @@ -83,7 +72,7 @@ If you are interested in participating in the development of OGMS, please send e - + definition editor @@ -91,7 +80,7 @@ If you are interested in participating in the development of OGMS, please send e - + definition source @@ -99,7 +88,7 @@ If you are interested in participating in the development of OGMS, please send e - + curator note @@ -107,13 +96,13 @@ If you are interested in participating in the development of OGMS, please send e - + - + @@ -130,1140 +119,1142 @@ If you are interested in participating in the development of OGMS, please send e - + - + - + - + - + - + - + - - + + An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity - + - - directive information content entity - + + An information content entity whose concretizations indicate to their bearer how to realize them in a process. - + + directive information content entity - - planned process - + + A processual entity that realizes a plan which is the concretization of a plan specification. - + + planned process - - clinical finding - - creation date: 2010-07-19T10:18:02Z - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Albert Goldfain + + A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof. + Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2010-07-19T10:18:02Z + clinical finding - - clinical history - - creation date: 2010-07-19T10:18:59Z - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Albert Goldfain + + A series of statements representing health-relevant qualities of a patient and of a patient's family. + Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2010-07-19T10:18:59Z + clinical history - - clinical picture - - Albert Goldfain + + A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2010-07-19T10:20:20Z + clinical picture - - image finding - + + A representation of an image that supports an inference to an assertion about some quality of a patient. - creation date: 2009-06-23T10:21:10Z Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T10:21:10Z + image finding - - laboratory finding - + + + A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient. creation date: 2009-06-23T10:21:58Z + laboratory finding - - preclinical finding - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - creation date: 2009-06-23T10:22:44Z + + A representation of a quality of a patient that is (1) recorded by a clinician because the quality is hypothesized to be of clinical significance and (2) refers to qualities obtaining in the patient prior to their becoming detectable in a clinical history taking or physical examination. Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T10:22:44Z + preclinical finding - - symptom - - note: defined class + + A quality of a patient that is observed by the patient or a processual entity experienced by the patient, either of which is hypothesized by the patient to be a realization of a disease. - creation date: 2010-11-18T11:02:10Z + note: defined class http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2010-11-18T11:02:10Z + symptom - - manifestation of a disease - + + A quality of a patient that is (a) a deviation from clinical normality that exists in virtue of the realization of a disease and (b) is observable. Albert Goldfain - creation date: 2009-06-23T11:12:33Z http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:12:33Z + manifestation of a disease - - phenotype - + + + A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - A (combination of) quality(ies) of an organism determined by the interaction of its genetic make-up and environment that differentiates specific instances of a species from other instances of the same species. creation date: 2010-07-19T11:13:49Z + phenotype - - sign - - creation date: 2010-11-18T11:14:36Z - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + A quality of a patient, a material entity that is part of a patient, or a processual entity that a patient participates in, any one of which is observed in a physical examination and is deemed by the clinician to be of clinical significance. note: defined class Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2010-11-18T11:14:36Z + sign - - clinical manifestation of a disease - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Albert Goldfain + + A manifestation of a disease that is detectable in a clinical history taking or physical examination. + Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:15:43Z + clinical manifestation of a disease - - preclinical manifestation of a disease - - creation date: 2009-06-23T11:16:50Z - Albert Goldfain + + A manifestation of a disease that exists prior to the time at which it would be detected in a clinical history taking or physical examination, if the patient were to present to a clinician. A realization of a disease that exists prior to its becoming detectable in a clinical history taking or physical examination. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:16:50Z + preclinical manifestation of a disease - - clinical phenotype - - creation date: 2009-06-23T11:18:05Z + + A clinically abnormal phenotype. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:18:05Z + clinical phenotype - - disease phenotype - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + + A clinically abnormal phenotype that is characteristic of a single disease. Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:18:39Z - A clinically abnormal phenotype that is characteristic of a single disease. + disease phenotype - - vital sign - - creation date: 2009-06-23T11:19:17Z + + A physical sign in which a non-zero value is standardly considered to be an indication that the organism is alive. - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:19:17Z + vital sign - - predisposition to disease of type X - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + + A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X. Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:20:25Z - A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X. + predisposition to disease of type X - - disease - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism. - creation date: 2009-06-23T11:21:20Z Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:21:20Z + disease - - homeostasis - + + Albert Goldfain creation date: 2009-06-23T11:22:01Z + homeostasis - - genetic predisposition to disease of type X - - creation date: 2009-06-23T11:23:07Z + + + A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X. + creation date: 2009-06-23T11:23:07Z + genetic predisposition to disease of type X - - acquired genetic disease - + + + A disease whose physical basis is an acquired genetic disorder. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:24:05Z - A disease whose physical basis is an acquired genetic disorder. + acquired genetic disease - - constitutional genetic disease - - Albert Goldfain + + A disease whose physical basis is a constitutional genetic disorder. - creation date: 2009-06-23T11:24:59Z + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:24:59Z + constitutional genetic disease - - abnormal homeostasis - - creation date: 2009-06-23T11:26:44Z + + + Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment. + creation date: 2009-06-23T11:26:44Z + abnormal homeostasis - - normal homeostasis - - creation date: 2009-06-23T11:27:28Z + + + Homeostasis of a type that is not clinically abnormal. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Homeostasis of a type that is not clinically abnormal. + creation date: 2009-06-23T11:27:28Z + normal homeostasis - - configuration - + + A quality which is an spatial arrangement or distribution of a(n) independent continuant(s) across a Three Dimensional Region. Albert Goldfain - creation date: 2009-06-23T11:36:24Z http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:36:24Z + configuration - - pathological physical configuration - - creation date: 2009-06-23T11:36:58Z + + + A configuration which deviates in some way from a canonical configuration for a particular organism. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - A configuration which deviates in some way from a canonical configuration for a particular organism. + creation date: 2009-06-23T11:36:58Z + pathological physical configuration - - disorder - - creation date: 2009-06-23T11:39:44Z + + A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:39:44Z + disorder - - epigenetic disorder - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence. - creation date: 2009-06-23T11:40:27Z Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:40:27Z + epigenetic disorder - - genetic disorder - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome. Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:41:14Z + genetic disorder - - acquired genetic disorder - - creation date: 2009-06-23T11:43:09Z - Albert Goldfain + + A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:43:09Z + acquired genetic disorder - - constitutional genetic disorder - - creation date: 2009-06-23T11:43:44Z - Albert Goldfain + + A genetic disorder inherited during conception that is part of all cells in the organism. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:43:44Z + constitutional genetic disorder - - clinical history taking - + + + A health care process in which a clinician elicits a description of previous sign and symptoms of disease from a patient or from a third party who is reporting on behalf of the patient. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:49:16Z - A health care process in which a clinician elicits a description of previous sign and symptoms of disease from a patient or from a third party who is reporting on behalf of the patient. + clinical history taking - - laboratory test - + + + A measurement assay that has as input a patient-derived specimen and as output a data itme that is about a quality of the specimen. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:49:49Z - A measurement assay that has as input a patient-derived specimen and as output a data itme that is about a quality of the specimen. + laboratory test - - physical examination - - Albert Goldfain + + A sequence of acts of observing and measuring qualities of a patient performed by a clinician; measurements may occur with and without elicitation. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2010-07-19T11:50:18Z + physical examination - - etiological process - + + A process in an organism that leads to a subsequent disorder. Albert Goldfain - creation date: 2009-06-23T11:53:07Z http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:53:07Z + etiological process - - bodily process - + + Albert Goldfain creation date: 2009-06-23T11:53:49Z + bodily process - - pathological bodily process - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Albert Goldfain + + A bodily process that is clinically abnormal. + Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:54:29Z + pathological bodily process - - disease course - + + The totality of all processes through which a given disease instance is realized. - creation date: 2009-06-23T11:55:44Z Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:55:44Z + disease course - - chronic disease course - - Albert Goldfain - creation date: 2009-06-23T11:56:26Z + + A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range. + Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:56:26Z + chronic disease course - - progressive disease course - + + A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-23T11:57:09Z + progressive disease course - - transient disease course - - creation date: 2009-06-23T11:57:44Z + + A disease course that terminates in a return to normal homeostasis. Albert Goldfain http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T11:57:44Z + transient disease course - - _undefined primitive term - - creation date: 2009-06-23T11:58:22Z + + Albert Goldfain + creation date: 2009-06-23T11:58:22Z + _undefined primitive term - - clinically abnormal - + + Albert Goldfain creation date: 2009-06-23T11:59:24Z + clinically abnormal - - physical basis - + + Albert Goldfain creation date: 2009-06-23T12:00:09Z + physical basis - - realization - + + Albert Goldfain creation date: 2009-06-23T12:00:39Z + realization - - diagnosis - - creation date: 2009-06-23T12:42:23Z - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf - Albert Goldfain + + The representation of a conclusion of a diagnostic process. + Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + creation date: 2009-06-23T12:42:23Z + diagnosis - - normal value - - http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf + + + A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population. Albert Goldfain + http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf creation date: 2009-06-26T10:31:34Z - A value for a quality reported in a lab report and asserted by the testing lab or the kit manufacturer to be normal based on a statistical treatment of values from a reference population. + normal value - - pathological formation - - creation date: 2009-07-13T02:14:59Z - http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf - Albert Goldfain + + TODO: Define, relate to disorder, and place in the OGMS hierarchy. + Albert Goldfain + http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf + creation date: 2009-07-13T02:14:59Z + pathological formation - - pathological anatomical structure - - http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf - Albert Goldfain + + An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs. + Albert Goldfain + http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf creation date: 2009-07-13T02:14:05Z + pathological anatomical structure - - portion of pathological body substance - - Albert Goldfain + + TODO: Define, relate to disorder, and place in the OGMS hierarchy. - creation date: 2009-07-13T02:15:17Z + Albert Goldfain http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf + creation date: 2009-07-13T02:15:17Z + portion of pathological body substance - - pathological transformation - + + A pathological bodily process in which a canonical anatomical structure becomes a pathological anatomical structure. - http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf Albert Goldfain + http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf creation date: 2009-07-13T02:17:07Z + pathological transformation - - pathological derivation - - Albert Goldfain + + A pathological bodily process in which matter is reorganized in such a way as to give rise to new pathological formations which take the place of entities existing earlier. + Albert Goldfain http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf creation date: 2009-07-13T02:17:24Z + pathological derivation - - pathological invasion - + + TODO: Define. + Albert Goldfain http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf creation date: 2009-07-13T02:17:47Z - Albert Goldfain + pathological invasion - - physical examination finding - - creation date: 2009-11-24T04:51:11Z + + TODO: Define. - http://code.google.com/p/ogms/issues/detail?id=26 Albert Goldfain + http://code.google.com/p/ogms/issues/detail?id=26 + creation date: 2009-11-24T04:51:11Z + physical examination finding - - organism population - + + + An aggregate of organisms of the same type. Albert Goldfain - creation date: 2009-11-24T04:51:11Z http://code.google.com/p/ogms/issues/detail?id=33 - An aggregate of organisms of the same type. + creation date: 2009-11-24T04:51:11Z + organism population - - pain - + + A bodily process in an organism S involving two integrated levels: (a) activation of the nociceptive system and associated emotion generating brain components of S, and (b) a simultaneous aversive sensory and emotional experience on the part of S, where (b) is phenomenologically similar to the sort of aversive experience involved in pain with concordant tissue damage. - http://www.referent-tracking.com/RTU/sendfile/?file=painTokyo1_27_2011.pdf Albert Goldfain + http://www.referent-tracking.com/RTU/sendfile/?file=painTokyo1_27_2011.pdf creation date: 2009-11-24T04:51:11Z + pain - - syndrome - - Albert Goldfain - creation date: 2009-11-24T04:51:11Z + + A pattern of signs and symptoms that typically co-occur. + Albert Goldfain http://code.google.com/p/ogms/issues/detail?id=32 + creation date: 2009-11-24T04:51:11Z + syndrome - - extended organism - - creation date: 2010-01-25T04:51:11Z - http://code.google.com/p/ogms/issues/detail?id=3 - Albert Goldfain + + An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism. + Albert Goldfain + http://code.google.com/p/ogms/issues/detail?id=3 + creation date: 2010-01-25T04:51:11Z + extended organism - - patient symptom report - + + A communication from a patient about something they perceive as being abnormal about their body or life. - http://code.google.com/p/ogms/issues/detail?id=12 Albert Goldfain + http://code.google.com/p/ogms/issues/detail?id=12 creation date: 2010-01-25T04:51:11Z + patient symptom report - - congenital malformation - - creation date: 2010-03-31T04:51:11Z - Albert Goldfain + + A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism. + Albert Goldfain http://code.google.com/p/ogms/issues/detail?id=28 + creation date: 2010-03-31T04:51:11Z + congenital malformation - - treatment - + + + A planned process whose completion is hypothesized by a health care provider to eliminate a disorder or to alleviate the signs and symptoms of a disorder. Albert Goldfain - creation date: 2010-03-31T04:51:11Z http://code.google.com/p/ogms/issues/detail?id=35 - A planned process whose completion is hypothesized by a health care provider to eliminate a disorder or to alleviate the signs and symptoms of a disorder. + creation date: 2010-03-31T04:51:11Z + treatment - - convalescence - + + + A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. + Albert Goldfain http://code.google.com/p/ogms/issues/detail?id=35 creation date: 2010-03-31T04:51:11Z - Albert Goldfain - A processual entity during which a patient participating in a disease course gradually returns to participating in a canonical life course. + convalescence - - life course - - creation date: 2010-03-31T04:51:11Z - -EDIT: 10 NOV 2015 - http://code.google.com/p/ogms/issues/detail?id=38 + + + A process which has as parts all the processes in which a given organism is participant. Albert Goldfain Richard Scheuermann Sagar Jain - A process which has as parts all the processes in which a given organism is participant. + http://code.google.com/p/ogms/issues/detail?id=38 + creation date: 2010-03-31T04:51:11Z + +EDIT: 10 NOV 2015 + life course - - prognosis - - http://code.google.com/p/ogms/issues/detail?id=35 + + A hypothesis about some future part of a disease course. Albert Goldfain + http://code.google.com/p/ogms/issues/detail?id=35 creation date: 2010-03-31T12:42:23Z + prognosis - - acute disease course - - Albert Goldfain + + a disease course with a rapid onset but typical unfolding of signs and symptoms after this rapid onset. + Albert Goldfain http://code.google.com/p/ogms/wiki/Meeting_notes_20100513 creation date: 2010-07-19T11:57:44Z + acute disease course - - inflammatory process - + + A bodily process caused by some disorder that results in recruitment of leukocytes into a localized tissue site, typically causing localized pain and swelling. Albert Goldfain Richard Scheuermann Sagar Jain + http://code.google.com/p/ogms/wiki/Meeting_notes_20100513 creation date: 2010-07-19T11:57:44Z Updated: 10 NOV 2015 - http://code.google.com/p/ogms/wiki/Meeting_notes_20100513 + inflammatory process - - health care process - - http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 + + + A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient Albert Goldfain Sagar Jain - A planned process with the objective to improve the health status of a patient that directly involves the treatment, diagnosis, or prevention of disease or injury of a patient + http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 creation date: 2011-02-21T09:57:44Z editor date: 2017-04-18 + health care process - - health care encounter - + + A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter - creation date: 2011-02-21T09:57:44Z - http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 Albert Goldfain + http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 + creation date: 2011-02-21T09:57:44Z + health care encounter - - hospitalization - - Albert Goldfain + + TODO - creation date: 2011-02-21T09:57:44Z + Albert Goldfain http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 + creation date: 2011-02-21T09:57:44Z + hospitalization - - outpatient encounter - + + + TODO Albert Goldfain http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 - TODO creation date: 2011-02-21T09:57:44Z + outpatient encounter - - inpatient encounter - - Albert Goldfain + + TODO - creation date: 2011-02-21T09:57:44Z + Albert Goldfain http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 + creation date: 2011-02-21T09:57:44Z + inpatient encounter - - ED encounter - - creation date: 2011-02-21T09:57:44Z + + TODO - http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 Albert Goldfain + http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6 + creation date: 2011-02-21T09:57:44Z + ED encounter - - injury - + + + A disorder that involves some structural damage that is immediately caused by a catastrophic external force. At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'. Note: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level. - A disorder that involves some structural damage that is immediately caused by a catastrophic external force. Albert Goldfain Sagar Jain - creation date: 2011-09-20T09:57:44Z -edited date: 30 SEPT 2015 http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5 OGMS call adoption- 16 SEPT 2015 https://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit + creation date: 2011-09-20T09:57:44Z +edited date: 30 SEPT 2015 + injury - - disease prophylaxis - + + A planned process whose completion is hypothesized by a health care provider to reduce the risk of developing a disorder or the signs and symptoms of a disorder. Whether or not 'prophylaxis' and 'treatment' classes are disjoint is an open question. Albert Goldfain - creation date: 2011-09-20T09:57:44Z http://groups.google.com/group/ogms-discuss/browse_thread/thread/e42bde79218ee34e + creation date: 2011-09-20T09:57:44Z + disease prophylaxis - - diagnostic process - + + A health care process that involves the interpretation of a clinical picture from a given patient (input) and the assertion to the effect that the patient has a disease, disorder, or syndrome of a certain type, or none of these (output). Albert Goldfain http://groups.google.com/group/ogms-discuss/browse_thread/thread/2a7008f311fac766/e7de486c94dfd82e creation date: 2011-09-20T09:57:44Z + diagnostic process - - relapse - - http://code.google.com/p/ogms/issues/detail?id=73 + + a disease stage which is preceded by a remission and characterized by the return of a manifestation of a disease. - 10 NOV 2015 + A pathological bodily process which is part of a disease couse that occurs after an incomplete remission and that is similar to earlier parts of the disease course. Albert Goldfain Richard Scheuermann Sagar Jain - A pathological bodily process which is part of a disease couse that occurs after an incomplete remission and that is similar to earlier parts of the disease course. + http://code.google.com/p/ogms/issues/detail?id=73 + 10 NOV 2015 + relapse - - remission - + + + a disease stage which is characterized by the lack of a manifestation of a disease. A part of a disease course in which the extent or rate of change of the signs and symptoms of a disorder has decreased. Albert Goldfain Richard Scheuermann Sagar Jain - 10 NOV 2015 http://code.google.com/p/ogms/issues/detail?id=73 - a disease stage which is characterized by the lack of a manifestation of a disease. + 10 NOV 2015 + remission - + - - ancillary health care process - - 2017-04-18 + + A planned process that has the objective to support the objective of a health care process without directly involving the treatment, diagnosis, or prevention of disease or injury of a patient. + 2017-04-18 Sagar Jain + ancillary health care process - + - - + + + A health care process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. + creation: 16MAY2017 + Sagar Jain + health care process assay - + - - health care process assay - - Sagar Jain - A health care process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies. + + + A health care process which results in physical changes in a specified input material creation: 16MAY2017 + Sagar Jain + health care process biomaterial transformation - + - - health care process biomaterial transformation - - Sagar Jain + + + A health care process that produces output from input data creation: 16MAY2017 - A health care process which results in physical changes in a specified input material + Sagar Jain + health care process data transformation - + - - health care process data transformation - - Sagar Jain - A health care process that produces output from input data - creation: 16MAY2017 + + + This class should be imported from OBI. https://github.com/OGMS/ogms/issues/105 + disease stage - +