eupath.md

layout	id	title	contact	depicted_by	description	domain	homepage	license	preferredPrefix	products	publications	repository	tags	tracker	usages	activity_status
ontology_detail	eupath	VEuPathDB ontology	email github label orcid [email protected] zhengj2007 Jie Zheng 0000-0002-2999-0103	https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png	An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).	organisms	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology	label url CC BY 4.0 http://creativecommons.org/licenses/by/4.0/	EUPATH	id eupath.owl	id title https://doi.org/10.5281/zenodo.6685957 Malaria study data integration and information retrieval based on OBO Foundry ontologies.	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology	functional genomics population biology clinical epidemiology microbiomes	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues	description type user The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology. annotation and query https://veupathdb.org description type user The VEuPathDB ontology is used in the clinical epidemiology resources. annotation and query https://clinepidb.org description type user The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments. annotation and query https://microbiomedb.org	inactive

The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.