qc-compliance.yml

# Basic ODK workflow

name: QC COB Compliance suite

on:
  # Runs once per month
  schedule:
    - cron: "0 0 1 * *"

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # This workflow contains a single job called "ontology_qc"
  ontology_qc:
    # The type of runner that the job will run on
    runs-on: ubuntu-latest
    container: obolibrary/odkfull:v1.5.2

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
      - uses: actions/checkout@v2

      - name: Run COB Integration test suite
        env:
          DEFAULT_BRANCH: master
        run: cd src/ontology && mkdir -p reports tmp && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' cob_test IMP=false PAT=false -B
      
      - name: Read and crop the contents of SUMMARY.txt
        id: read_summary
        run: |
          summary_content=$(cat products/SUMMARY.txt)
          max_length=65500  # Slightly less than the max limit to account for metadata or other content
          if [ ${#summary_content} -gt $max_length ]; then
            summary_content="${summary_content:0:$max_length}"
            summary_content="${summary_content}\n\n...Content cropped due to length limits."
          fi
          
          # Wrap the content in a collapsible details block
          wrapped_content="<details><summary>Latest integration report</summary>\n\n${summary_content}\n\n</details>"
          
          echo "::set-output name=summary::${wrapped_content}"
        shell: bash

      - name: Post summary to the issue
        run: gh issue comment 278 --body "$SUMMARY_CONTENT"
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
          SUMMARY_CONTENT: ${{ steps.read_summary.outputs.summary }}