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Error: File "PyInstaller/loader/pyimod02_importers.py", line 419, in exec_module
File "manageNeuroconv/__init__.py", line 2, in <module>
File "PyInstaller/loader/pyimod02_importers.py", line 419, in exec_module
File "manageNeuroconv/manage_neuroconv.py", line 17, in <module>
File "PyInstaller/loader/pyimod02_importers.py", line 419, in exec_module
File "pynwb/__init__.py", line 10, in <module>
File "PyInstaller/loader/pyimod02_importers.py", line 419, in exec_module
File "h5py/__init__.py", line 25, in <module>
ImportError: dlopen(/Users/runner/work/nwb-guide/nwb-guide/build/flask/nwb-guide/_internal/h5py/_errors.cpython-39-darwin.so, 0x0002): Symbol not found: _H5T_IEEE_F[16](https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/13458366543/job/37607424448#step:15:17)BE_g
Referenced from: <E63CF6C4-706B-3E0B-953D-CC7FF32770E8> /Users/runner/work/nwb-guide/nwb-guide/build/flask/nwb-guide/_internal/h5py/.dylibs/libhdf5_hl.310.dylib
Expected in: <263AC110-613B-362E-8F5B-587BB3E43B61> /Users/runner/work/nwb-guide/nwb-guide/build/flask/nwb-guide/_internal/tables/.dylibs/libhdf5.310.dylib
[1[19](https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/13458366543/job/37607424448#step:15:20)26] Failed to execute script 'app' due to unhandled exception!
On February 18, h5py==3.13.0 was released which updates the prebuilt HDF5 library to 1.14.6. I suspect that there is an HDF5 conflict between h5py and tables (pytables). It is also strange that despite python being pinned to 3.9, the 3.10 hdf5 libraries are referenced in the error.
Steps to Reproduce
Run Mac OS (x64) build CI
Operating System
Mac OS x64
GUIDE Version
main
Code of Conduct
Yes
Did you confirm this issue was not already reported?
Yes
The text was updated successfully, but these errors were encountered:
Describe the issue
https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/13414372005 and also
https://github.com/NeurodataWithoutBorders/nwb-guide/actions/runs/13463910009/job/37634708312?pr=970
Started on February 19.
Error:
On February 18, h5py==3.13.0 was released which updates the prebuilt HDF5 library to 1.14.6. I suspect that there is an HDF5 conflict between h5py and tables (pytables). It is also strange that despite python being pinned to 3.9, the 3.10 hdf5 libraries are referenced in the error.
Steps to Reproduce
Run Mac OS (x64) build CI
Operating System
Mac OS x64
GUIDE Version
main
Code of Conduct
Yes
Did you confirm this issue was not already reported?
Yes
The text was updated successfully, but these errors were encountered: