Merge branch 'main' into fix_neurosift_plus

environments/environment-Linux.yml

@@ -3,9 +3,8 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python = 3.9.18
+  - python = 3.12.9
   - nodejs = 18.16.1
-  - numcodecs = 0.11.0
   # install these from conda-forge so that dependent packages get included in the distributable
   - jsonschema = 4.18.0 # installs jsonschema-specifications
   - pip

environments/environment-MAC-apple-silicon.yml

@@ -3,14 +3,13 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python = 3.9.18
+  - python = 3.12.9
   - nodejs = 18.16.1
   # Install these from conda-forge so that dependent packages get included in the distributable
-  - numcodecs = 0.11.0
   - lxml = 4.9.3 # PyPI build fails due to x64/arm64 mismatch so install from conda-forge
-  - pyedflib = 0.1.32 # PyPI build fails due to x64/arm64 mismatch so install from conda-forge
+  - pyedflib = 0.1.38 # PyPI build fails due to x64/arm64 mismatch so install from conda-forge
   - numpy # May have x64/arm64 mismatch issues so install from conda-forge
-  - pytables = 3.8 # PyPI build fails on arm64 so install from conda-forge (used by neuroconv deps)
+  - pytables = 3.10.2 # PyPI build fails on arm64 so install from conda-forge (used by neuroconv deps)
   - jsonschema = 4.18.0 # Also installs jsonschema-specifications
   - pip
   - pip:

environments/environment-MAC-intel.yml

@@ -3,11 +3,11 @@ channels:
   - conda-forge
   - defaults
 dependencies:
-  - python = 3.9.18
+  - python = 3.12.9
   - nodejs = 18.16.1
-  - numcodecs = 0.11.0
   # install these from conda-forge so that dependent packages get included in the distributable
   - jsonschema = 4.18.0 # installs jsonschema-specifications
+  - pytables = 3.10.2 # Install from conda-forge because PyPI version results in hdf5 conflicts and missing libs
   - pip
   - pip:
       - setuptools==70.0.0
@@ -28,4 +28,3 @@ dependencies:
       - tzlocal >= 5.2 # Frontend timezone handling
       - ndx-pose == 0.1.1
       - nwbinspector==0.6.2
-      - tables

environments/environment-Windows.yml

@@ -3,11 +3,10 @@ channels:
   - defaults
   - conda-forge
 dependencies:
-  - python = 3.9.17
+  - python = 3.12.9
   - nodejs = 18.16.1
-  - pywin32 = 303
+  - pywin32 = 308
   - git = 2.20.1
-  - setuptools = 58.0.4
   - pip
   - pip:
       - setuptools==70.0.0

nwb-guide.spec

@@ -16,6 +16,7 @@ hiddenimports = [
     'email_validator',
     *collect_submodules('scipy.special.cython_special'),
     *collect_submodules('scipy.special._cdflib'),
+    'scipy._lib.array_api_compat.numpy.fft',
 ]
 
 datas += collect_data_files('jsonschema_specifications')
@@ -40,6 +41,7 @@ modules_to_collect = [
     'tzdata',
     'elephant',
     'ScanImageTiffReader',
+    'deprecated',
 ]
 for module_name in modules_to_collect:
     collection = collect_all(module_name)

package.json

@@ -1,7 +1,7 @@
 {
   "name": "nwb-guide",
   "productName": "NWB GUIDE",
-  "version": "1.0.5",
+  "version": "1.0.6-beta",
   "description": "NWB GUIDE is a desktop app that provides a no-code user interface for converting neurophysiology data to NWB.",
   "main": "./build/main/index.js",
   "engine": {