This is the code for the paper, A Multimodal Graph Neural Network Framework for Cancer Molecular Subtype Classification.
The complete conda enviroment list is in enviroment.yml file.
For classificaiton on BRCA dataset, use the following command.
python cancer_test.py --model gat --num_gene 100 --cancer_subtype True --omic_mode 4 --shuffle_index 0 --gene_gene True --mirna_gene True --mirna_mirna True --parallel True --l2 True --decoder False --poolsize 8 --edge_weight True --epochs 200 --train_ratio 0.7 --test_ratio 0.1