test_unit_standalone.yml

# Test changes that have been pushed to the master

name: BMI Unit Testing and Model Standalone

# Controls when the action will run.
on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]
  #this will allow a manual trigger
  workflow_dispatch:

#env:
  #LINUX_NUM_PROC_CORES: 2
  #MACOS_NUM_PROC_CORES: 3

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # Run general unit tests in linux environment
  test_unit:
    # The type of runner that the job will run on
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest] # windows will fail(?)
        python-version: ['3.10', 3.11, 3.12]
      fail-fast: false
    runs-on: ${{ matrix.os }}

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
    - name: Checkout the commit
      uses: actions/checkout@v4
      
    - name: setup python # ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
        
    #- name: create conda env
    #  run: $CONDA/bin/conda env create -f environment.yml
        
    - name: activate conda
      uses: conda-incubator/setup-miniconda@v3
      with:
        activate-environment: bmi_lstm
        environment-file: ./environment.yml
        #python-version: ${{ matrix.python-version }}
        # this may not be necessary? tbd..
        auto-activate-base: false
        
    - name: install packages
      run: |
        python -m pip install --upgrade pip
        pip install -e .
      
    # RUN MAIN BMI UNIT TEST
    - name: Run BMI Unit Test LSTM
      run: python lstm/run_bmi_unit_test.py
      
    # RUN MAIN STANDALONE SCRIPT
    - name: Run Standalone LSTM
      run: python -m lstm