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Hi @slabhan1 Sorry for the delay in responding. If you are only running with 1 task, you can just run with this command:
It sounds like this is already working for you. I think "mpirun" can cause errors when running with just 1 task. If that's not the issue, are you sure that you have both compiled and submitted the job from a Milan node? I see you are on Discover. You can point me to your LISF/lis/make/configure.lis (ensure permissions are open) and I'll take a look. I just posted a separate discussion. Please see if Issue 5 in it might apply to you. #1642 My apologies, I see that we never responded to your question from March: #1503 Would you still like us to respond to that other question? |
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Hi David,
Thank you, those were helpful leads, and solved the issue. I don't think I need help to use ERA5 anymore, I have been using MERRA2.
Both these discussions can be closed! Thank you!
…________________________________
From: David Mocko ***@***.***>
Sent: Thursday, November 21, 2024 2:33 PM
To: NASA-LIS/LISF ***@***.***>
Cc: Sakshi Labhane ***@***.***>; Mention ***@***.***>
Subject: Re: [NASA-LIS/LISF] Slurm script fails when I request mpirun/ntasks (Discussion #1641)
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Hi @slabhan1<https://github.com/slabhan1>
Sorry for the delay in responding. If you are only running with 1 task, you can just run with this command:
./LIS -f ./LDAS_irri/lis_config_2001
It sounds like this is already working for you. I think "mpirun" can cause errors when running with just 1 task.
If that's not the issue, are you sure that you have both compiled and submitted the job from a Milan node?
I see you are on Discover. You can point me to your LISF/lis/make/configure.lis (ensure permissions are open) and I'll take a look.
I just posted a separate discussion. Please see if Issue 5 in it might apply to you. #1642<#1642>
My apologies, I see that we never responded to your question from March: #1503<#1503>
Would you still like us to respond to that other question?
—
Reply to this email directly, view it on GitHub<#1641 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AXQLRRE7ZI3MR67CN4NWZ6L2BYYQ3AVCNFSM6AAAAABSA2KI6KVHI2DSMVQWIX3LMV43URDJONRXK43TNFXW4Q3PNVWWK3TUHMYTCMZUGA2TINA>.
You are receiving this because you were mentioned.Message ID: ***@***.***>
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I am trying to run a LIS (module openmpi_5.0.0) with the following slurm script on Milan:
Which throws the error:

I have tried to run this without "mpirun -np 1" and "ntasks = 1" and it works just fine, so I imagine it's not an issue with the executable/config. I can't figure out why I can't run this with mpirun, please help!
mpirun --version
mpirun (Open MPI) 5.0.0
sinfo --version
slurm 22.05.11
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