From 0971bbf316e5d90b1e3042bc0f3ec372518f5e1e Mon Sep 17 00:00:00 2001
From: dorahermes <dorahermes@gmail.com>
Date: Wed, 17 Jul 2024 13:14:03 -0500
Subject: [PATCH] updated preprocessing script

---
 .gitignore               | 10 +++++++++-
 script01_preprocNSDMef.m | 28 ++++++++++++++--------------
 2 files changed, 23 insertions(+), 15 deletions(-)

diff --git a/.gitignore b/.gitignore
index 337276f..cab582f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,6 +1,14 @@
+
+% ignore folders with data and temporary tests
 data/
 output/
+testing/
+
+% ignore personal data path 
 personalDataPath.m
+
+% ignore storage files
 .DS_Store
 */.DS_Store
-*.asv
\ No newline at end of file
+*.asv
+*.m~
diff --git a/script01_preprocNSDMef.m b/script01_preprocNSDMef.m
index 553b28e..5a693e0 100644
--- a/script01_preprocNSDMef.m
+++ b/script01_preprocNSDMef.m
@@ -187,9 +187,9 @@
 localDataPath = setLocalDataPath(1); % runs local PersonalDataPath (gitignored)
 addpath('functions');
 
-subjects = {'01','02','03','04','05','06'};
+subjects = {'01','02','03','04','05','06','07','08','09','10','11','12','13','14','15','16','17'};
 
-ss = 5;
+ss = 13;
 sub_label = subjects{ss};
 ses_label = 'ieeg01';
 
@@ -280,11 +280,11 @@
     if hh==1
         hemi = 'l';
         g = gL_infl;
-        views_plot = {[40,-30],[-45,-10],[-90,20]};
+        views_plot = {[40,-30],[-45,-10],[-90,20],[90 0]};
     elseif hh==2
         hemi = 'r';
         g = gR_infl;
-        views_plot = {[-40,-30],[45,-10],[90,20]};
+        views_plot = {[-40,-30],[45,-10],[90,20],[270 0]};
     end
 
     % surface labels 
@@ -331,16 +331,16 @@
         print('-dpng','-r300',fullfile(localDataPath.input,'derivatives','render',['sub-' sub_label],...
             ['inflated_labels_sub-' sub_label '_WangAreas_v' int2str(v_d(1)) '_' int2str(v_d(2)) '_' hemi]))
              
-%         % with activity
-%         figure
-%         tH = ieeg_RenderGiftiLabels(g,vert_label,cmap,Wang_ROI_Names,sulcal_labels);
-%         all_chan_snr_plot = all_chan_snr;
-%         all_chan_snr_plot(all_chan_snr_plot<.2) = 0;
-%         ieeg_elAdd_sizable(els_pop(electrodes_thisHemi,:),all_chan_snr_plot(electrodes_thisHemi),.8,40) % add electrode positions
-%         ieeg_viewLight(v_d(1),v_d(2)) % change viewing angle   
-%         set(gcf,'PaperPositionMode','auto')
-%         print('-dpng','-r300',fullfile(localDataPath.input,'derivatives','render',['sub-' sub_label],...
-%             ['NCSNR_sub-' sub_label '_WangAreas_v' int2str(v_d(1)) '_' int2str(v_d(2)) '_' hemi]))
+        % with activity
+        figure
+        tH = ieeg_RenderGiftiLabels(g,vert_label,cmap,Wang_ROI_Names,sulcal_labels);
+        all_chan_snr_plot = all_chan_snr;
+        all_chan_snr_plot(all_chan_snr_plot<.2) = 0;
+        ieeg_elAdd_sizable(els_pop(electrodes_thisHemi,:),all_chan_snr_plot(electrodes_thisHemi),.8,40) % add electrode positions
+        ieeg_viewLight(v_d(1),v_d(2)) % change viewing angle   
+        set(gcf,'PaperPositionMode','auto')
+        print('-dpng','-r300',fullfile(localDataPath.input,'derivatives','render',['sub-' sub_label],...
+            ['NCSNR_sub-' sub_label '_WangAreas_v' int2str(v_d(1)) '_' int2str(v_d(2)) '_' hemi]))
     end
     close all