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freesurfer_columns.py
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COLUMNS_NAMES = ['EstimatedTotalIntraCranialVol',
'Left-Lateral-Ventricle',
'Left-Inf-Lat-Vent',
'Left-Cerebellum-White-Matter',
'Left-Cerebellum-Cortex',
'Left-Thalamus-Proper',
'Left-Caudate',
'Left-Putamen',
'Left-Pallidum',
'3rd-Ventricle',
'4th-Ventricle',
'Brain-Stem',
'Left-Hippocampus',
'Left-Amygdala',
'CSF',
'Left-Accumbens-area',
'Left-VentralDC',
'Right-Lateral-Ventricle',
'Right-Inf-Lat-Vent',
'Right-Cerebellum-White-Matter',
'Right-Cerebellum-Cortex',
'Right-Thalamus-Proper',
'Right-Caudate',
'Right-Putamen',
'Right-Pallidum',
'Right-Hippocampus',
'Right-Amygdala',
'Right-Accumbens-area',
'Right-VentralDC',
'CC_Posterior',
'CC_Mid_Posterior',
'CC_Central',
'CC_Mid_Anterior',
'CC_Anterior',
'lh_bankssts_volume',
'lh_caudalanteriorcingulate_volume',
'lh_caudalmiddlefrontal_volume',
'lh_cuneus_volume',
'lh_entorhinal_volume',
'lh_fusiform_volume',
'lh_inferiorparietal_volume',
'lh_inferiortemporal_volume',
'lh_isthmuscingulate_volume',
'lh_lateraloccipital_volume',
'lh_lateralorbitofrontal_volume',
'lh_lingual_volume',
'lh_medialorbitofrontal_volume',
'lh_middletemporal_volume',
'lh_parahippocampal_volume',
'lh_paracentral_volume',
'lh_parsopercularis_volume',
'lh_parsorbitalis_volume',
'lh_parstriangularis_volume',
'lh_pericalcarine_volume',
'lh_postcentral_volume',
'lh_posteriorcingulate_volume',
'lh_precentral_volume',
'lh_precuneus_volume',
'lh_rostralanteriorcingulate_volume',
'lh_rostralmiddlefrontal_volume',
'lh_superiorfrontal_volume',
'lh_superiorparietal_volume',
'lh_superiortemporal_volume',
'lh_supramarginal_volume',
'lh_frontalpole_volume',
'lh_temporalpole_volume',
'lh_transversetemporal_volume',
'lh_insula_volume',
'rh_bankssts_volume',
'rh_caudalanteriorcingulate_volume',
'rh_caudalmiddlefrontal_volume',
'rh_cuneus_volume',
'rh_entorhinal_volume',
'rh_fusiform_volume',
'rh_inferiorparietal_volume',
'rh_inferiortemporal_volume',
'rh_isthmuscingulate_volume',
'rh_lateraloccipital_volume',
'rh_lateralorbitofrontal_volume',
'rh_lingual_volume',
'rh_medialorbitofrontal_volume',
'rh_middletemporal_volume',
'rh_parahippocampal_volume',
'rh_paracentral_volume',
'rh_parsopercularis_volume',
'rh_parsorbitalis_volume',
'rh_parstriangularis_volume',
'rh_pericalcarine_volume',
'rh_postcentral_volume',
'rh_posteriorcingulate_volume',
'rh_precentral_volume',
'rh_precuneus_volume',
'rh_rostralanteriorcingulate_volume',
'rh_rostralmiddlefrontal_volume',
'rh_superiorfrontal_volume',
'rh_superiorparietal_volume',
'rh_superiortemporal_volume',
'rh_supramarginal_volume',
'rh_frontalpole_volume',
'rh_temporalpole_volume',
'rh_transversetemporal_volume',
'rh_insula_volume']
curv_list = ['EstimatedTotalIntraCranialVol',
'Left-Lateral-Ventricle',
'Left-Inf-Lat-Vent',
'Left-Cerebellum-White-Matter',
'Left-Cerebellum-Cortex',
'Left-Thalamus-Proper',
'Left-Caudate',
'Left-Putamen',
'Left-Pallidum',
'3rd-Ventricle',
'4th-Ventricle',
'Brain-Stem',
'Left-Hippocampus',
'Left-Amygdala',
'CSF',
'Left-Accumbens-area',
'Left-VentralDC',
'Right-Lateral-Ventricle',
'Right-Inf-Lat-Vent',
'Right-Cerebellum-White-Matter',
'Right-Cerebellum-Cortex',
'Right-Thalamus-Proper',
'Right-Caudate',
'Right-Putamen',
'Right-Pallidum',
'Right-Hippocampus',
'Right-Amygdala',
'Right-Accumbens-area',
'Right-VentralDC',
'CC_Posterior',
'CC_Mid_Posterior',
'CC_Central',
'CC_Mid_Anterior',
'CC_Anterior',
'lh_bankssts_meancurv',
'lh_caudalanteriorcingulate_meancurv',
'lh_caudalmiddlefrontal_meancurv',
'lh_cuneus_meancurv',
'lh_entorhinal_meancurv',
'lh_fusiform_meancurv',
'lh_inferiorparietal_meancurv',
'lh_inferiortemporal_meancurv',
'lh_isthmuscingulate_meancurv',
'lh_lateraloccipital_meancurv',
'lh_lateralorbitofrontal_meancurv',
'lh_lingual_meancurv',
'lh_medialorbitofrontal_meancurv',
'lh_middletemporal_meancurv',
'lh_parahippocampal_meancurv',
'lh_paracentral_meancurv',
'lh_parsopercularis_meancurv',
'lh_parsorbitalis_meancurv',
'lh_parstriangularis_meancurv',
'lh_pericalcarine_meancurv',
'lh_postcentral_meancurv',
'lh_posteriorcingulate_meancurv',
'lh_precentral_meancurv',
'lh_precuneus_meancurv',
'lh_rostralanteriorcingulate_meancurv',
'lh_rostralmiddlefrontal_meancurv',
'lh_superiorfrontal_meancurv',
'lh_superiorparietal_meancurv',
'lh_superiortemporal_meancurv',
'lh_supramarginal_meancurv',
'lh_frontalpole_meancurv',
'lh_temporalpole_meancurv',
'lh_transversetemporal_meancurv',
'lh_insula_meancurv',
'rh_bankssts_meancurv',
'rh_caudalanteriorcingulate_meancurv',
'rh_caudalmiddlefrontal_meancurv',
'rh_cuneus_meancurv',
'rh_entorhinal_meancurv',
'rh_fusiform_meancurv',
'rh_inferiorparietal_meancurv',
'rh_inferiortemporal_meancurv',
'rh_isthmuscingulate_meancurv',
'rh_lateraloccipital_meancurv',
'rh_lateralorbitofrontal_meancurv',
'rh_lingual_meancurv',
'rh_medialorbitofrontal_meancurv',
'rh_middletemporal_meancurv',
'rh_parahippocampal_meancurv',
'rh_paracentral_meancurv',
'rh_parsopercularis_meancurv',
'rh_parsorbitalis_meancurv',
'rh_parstriangularis_meancurv',
'rh_pericalcarine_meancurv',
'rh_postcentral_meancurv',
'rh_posteriorcingulate_meancurv',
'rh_precentral_meancurv',
'rh_precuneus_meancurv',
'rh_rostralanteriorcingulate_meancurv',
'rh_rostralmiddlefrontal_meancurv',
'rh_superiorfrontal_meancurv',
'rh_superiorparietal_meancurv',
'rh_superiortemporal_meancurv',
'rh_supramarginal_meancurv',
'rh_frontalpole_meancurv',
'rh_temporalpole_meancurv',
'rh_transversetemporal_meancurv',
'rh_insula_meancurv']
thk_and_vol=['lh_bankssts_thickness',
'lh_caudalanteriorcingulate_thickness',
'lh_caudalmiddlefrontal_thickness',
'lh_cuneus_thickness',
'lh_entorhinal_thickness',
'lh_fusiform_thickness',
'lh_inferiorparietal_thickness',
'lh_inferiortemporal_thickness',
'lh_isthmuscingulate_thickness',
'lh_lateraloccipital_thickness',
'lh_lateralorbitofrontal_thickness',
'lh_lingual_thickness',
'lh_medialorbitofrontal_thickness',
'lh_middletemporal_thickness',
'lh_parahippocampal_thickness',
'lh_paracentral_thickness',
'lh_parsopercularis_thickness',
'lh_parsorbitalis_thickness',
'lh_parstriangularis_thickness',
'lh_pericalcarine_thickness',
'lh_postcentral_thickness',
'lh_posteriorcingulate_thickness',
'lh_precentral_thickness',
'lh_precuneus_thickness',
'lh_rostralanteriorcingulate_thickness',
'lh_rostralmiddlefrontal_thickness',
'lh_superiorfrontal_thickness',
'lh_superiorparietal_thickness',
'lh_superiortemporal_thickness',
'lh_supramarginal_thickness',
'lh_frontalpole_thickness',
'lh_temporalpole_thickness',
'lh_transversetemporal_thickness',
'lh_insula_thickness',
'lh_MeanThickness_thickness',
'rh_bankssts_thickness',
'rh_caudalanteriorcingulate_thickness',
'rh_caudalmiddlefrontal_thickness',
'rh_cuneus_thickness',
'rh_entorhinal_thickness',
'rh_fusiform_thickness',
'rh_inferiorparietal_thickness',
'rh_inferiortemporal_thickness',
'rh_isthmuscingulate_thickness',
'rh_lateraloccipital_thickness',
'rh_lateralorbitofrontal_thickness',
'rh_lingual_thickness',
'rh_medialorbitofrontal_thickness',
'rh_middletemporal_thickness',
'rh_parahippocampal_thickness',
'rh_paracentral_thickness',
'rh_parsopercularis_thickness',
'rh_parsorbitalis_thickness',
'rh_parstriangularis_thickness',
'rh_pericalcarine_thickness',
'rh_postcentral_thickness',
'rh_posteriorcingulate_thickness',
'rh_precentral_thickness',
'rh_precuneus_thickness',
'rh_rostralanteriorcingulate_thickness',
'rh_rostralmiddlefrontal_thickness',
'rh_superiorfrontal_thickness',
'rh_superiorparietal_thickness',
'rh_superiortemporal_thickness',
'rh_supramarginal_thickness',
'rh_frontalpole_thickness',
'rh_temporalpole_thickness',
'rh_transversetemporal_thickness',
'rh_insula_thickness',
'rh_MeanThickness_thickness',
'Left-Lateral-Ventricle',
'Left-Inf-Lat-Vent',
'Left-Cerebellum-White-Matter',
'Left-Cerebellum-Cortex',
'Left-Thalamus-Proper',
'Left-Caudate',
'Left-Putamen',
'Left-Pallidum',
'3rd-Ventricle',
'4th-Ventricle',
'Brain-Stem',
'Left-Hippocampus',
'Left-Amygdala',
'CSF',
'Left-Accumbens-area',
'Left-VentralDC',
'Right-Lateral-Ventricle',
'Right-Inf-Lat-Vent',
'Right-Cerebellum-White-Matter',
'Right-Cerebellum-Cortex',
'Right-Thalamus-Proper',
'Right-Caudate',
'Right-Putamen',
'Right-Pallidum',
'Right-Hippocampus',
'Right-Amygdala',
'Right-Accumbens-area',
'Right-VentralDC',
'CC_Posterior',
'CC_Mid_Posterior',
'CC_Central',
'CC_Mid_Anterior',
'CC_Anterior',
'SubCortGrayVol',
'TotalGrayVol',
'SupraTentorialVol',
'Left-Cerebellum-White-Matter',
'Right-Cerebellum-White-Matter',
'lhCortexVol',
'rhCortexVol',
]
thk_vol_curv = ['lh_bankssts_thickness',
'lh_caudalanteriorcingulate_thickness',
'lh_caudalmiddlefrontal_thickness',
'lh_cuneus_thickness',
'lh_entorhinal_thickness',
'lh_fusiform_thickness',
'lh_inferiorparietal_thickness',
'lh_inferiortemporal_thickness',
'lh_isthmuscingulate_thickness',
'lh_lateraloccipital_thickness',
'lh_lateralorbitofrontal_thickness',
'lh_lingual_thickness',
'lh_medialorbitofrontal_thickness',
'lh_middletemporal_thickness',
'lh_parahippocampal_thickness',
'lh_paracentral_thickness',
'lh_parsopercularis_thickness',
'lh_parsorbitalis_thickness',
'lh_parstriangularis_thickness',
'lh_pericalcarine_thickness',
'lh_postcentral_thickness',
'lh_posteriorcingulate_thickness',
'lh_precentral_thickness',
'lh_precuneus_thickness',
'lh_rostralanteriorcingulate_thickness',
'lh_rostralmiddlefrontal_thickness',
'lh_superiorfrontal_thickness',
'lh_superiorparietal_thickness',
'lh_superiortemporal_thickness',
'lh_supramarginal_thickness',
'lh_frontalpole_thickness',
'lh_temporalpole_thickness',
'lh_transversetemporal_thickness',
'lh_insula_thickness',
'lh_MeanThickness_thickness',
'rh_bankssts_thickness',
'rh_caudalanteriorcingulate_thickness',
'rh_caudalmiddlefrontal_thickness',
'rh_cuneus_thickness',
'rh_entorhinal_thickness',
'rh_fusiform_thickness',
'rh_inferiorparietal_thickness',
'rh_inferiortemporal_thickness',
'rh_isthmuscingulate_thickness',
'rh_lateraloccipital_thickness',
'rh_lateralorbitofrontal_thickness',
'rh_lingual_thickness',
'rh_medialorbitofrontal_thickness',
'rh_middletemporal_thickness',
'rh_parahippocampal_thickness',
'rh_paracentral_thickness',
'rh_parsopercularis_thickness',
'rh_parsorbitalis_thickness',
'rh_parstriangularis_thickness',
'rh_pericalcarine_thickness',
'rh_postcentral_thickness',
'rh_posteriorcingulate_thickness',
'rh_precentral_thickness',
'rh_precuneus_thickness',
'rh_rostralanteriorcingulate_thickness',
'rh_rostralmiddlefrontal_thickness',
'rh_superiorfrontal_thickness',
'rh_superiorparietal_thickness',
'rh_superiortemporal_thickness',
'rh_supramarginal_thickness',
'rh_frontalpole_thickness',
'rh_temporalpole_thickness',
'rh_transversetemporal_thickness',
'rh_insula_thickness',
'rh_MeanThickness_thickness',
'Left-Lateral-Ventricle',
'Left-Inf-Lat-Vent',
'Left-Cerebellum-White-Matter',
'Left-Cerebellum-Cortex',
'Left-Thalamus-Proper',
'Left-Caudate',
'Left-Putamen',
'Left-Pallidum',
'3rd-Ventricle',
'4th-Ventricle',
'Brain-Stem',
'Left-Hippocampus',
'Left-Amygdala',
'CSF',
'Left-Accumbens-area',
'Left-VentralDC',
'Right-Lateral-Ventricle',
'Right-Inf-Lat-Vent',
'Right-Cerebellum-White-Matter',
'Right-Cerebellum-Cortex',
'Right-Thalamus-Proper',
'Right-Caudate',
'Right-Putamen',
'Right-Pallidum',
'Right-Hippocampus',
'Right-Amygdala',
'Right-Accumbens-area',
'Right-VentralDC',
'CC_Posterior',
'CC_Mid_Posterior',
'CC_Central',
'CC_Mid_Anterior',
'CC_Anterior',
'SubCortGrayVol',
'TotalGrayVol',
'SupraTentorialVol',
'Left-Cerebellum-White-Matter',
'Right-Cerebellum-White-Matter',
'lhCortexVol',
'rhCortexVol',
'lh_bankssts_meancurv',
'lh_caudalanteriorcingulate_meancurv',
'lh_caudalmiddlefrontal_meancurv',
'lh_cuneus_meancurv',
'lh_entorhinal_meancurv',
'lh_fusiform_meancurv',
'lh_inferiorparietal_meancurv',
'lh_inferiortemporal_meancurv',
'lh_isthmuscingulate_meancurv',
'lh_lateraloccipital_meancurv',
'lh_lateralorbitofrontal_meancurv',
'lh_lingual_meancurv',
'lh_medialorbitofrontal_meancurv',
'lh_middletemporal_meancurv',
'lh_parahippocampal_meancurv',
'lh_paracentral_meancurv',
'lh_parsopercularis_meancurv',
'lh_parsorbitalis_meancurv',
'lh_parstriangularis_meancurv',
'lh_pericalcarine_meancurv',
'lh_postcentral_meancurv',
'lh_posteriorcingulate_meancurv',
'lh_precentral_meancurv',
'lh_precuneus_meancurv',
'lh_rostralanteriorcingulate_meancurv',
'lh_rostralmiddlefrontal_meancurv',
'lh_superiorfrontal_meancurv',
'lh_superiorparietal_meancurv',
'lh_superiortemporal_meancurv',
'lh_supramarginal_meancurv',
'lh_frontalpole_meancurv',
'lh_temporalpole_meancurv',
'lh_transversetemporal_meancurv',
'lh_insula_meancurv',
'rh_bankssts_meancurv',
'rh_caudalanteriorcingulate_meancurv',
'rh_caudalmiddlefrontal_meancurv',
'rh_cuneus_meancurv',
'rh_entorhinal_meancurv',
'rh_fusiform_meancurv',
'rh_inferiorparietal_meancurv',
'rh_inferiortemporal_meancurv',
'rh_isthmuscingulate_meancurv',
'rh_lateraloccipital_meancurv',
'rh_lateralorbitofrontal_meancurv',
'rh_lingual_meancurv',
'rh_medialorbitofrontal_meancurv',
'rh_middletemporal_meancurv',
'rh_parahippocampal_meancurv',
'rh_paracentral_meancurv',
'rh_parsopercularis_meancurv',
'rh_parsorbitalis_meancurv',
'rh_parstriangularis_meancurv',
'rh_pericalcarine_meancurv',
'rh_postcentral_meancurv',
'rh_posteriorcingulate_meancurv',
'rh_precentral_meancurv',
'rh_precuneus_meancurv',
'rh_rostralanteriorcingulate_meancurv',
'rh_rostralmiddlefrontal_meancurv',
'rh_superiorfrontal_meancurv',
'rh_superiorparietal_meancurv',
'rh_superiortemporal_meancurv',
'rh_supramarginal_meancurv',
'rh_frontalpole_meancurv',
'rh_temporalpole_meancurv',
'rh_transversetemporal_meancurv',
'rh_insula_meancurv'
]